Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I2 R1
|
721 |
0.0 |
1472758 |
54.8% |
807071 |
56.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
3,244,017 |
G→A |
Q86Q (CAG→CAA) |
exuT → |
hexuronate transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 3,244,017 | 0 | G | A | 100.0%
| 190.9
/ NA
| 70 | Q86Q (CAG→CAA) | exuT | hexuronate transporter |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (0/70); total (0/70) |
TCCACCCAACAGTATTCCTATATCATCGCAGCCTATTCTG > W3110S.gb/3244006‑3244045
|
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:384153/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:662447/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:651183/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:617065/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:609283/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:607385/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:566012/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:545933/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:441984/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:792509/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:37049/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:358676/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:349494/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:329918/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:318397/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:317230/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:295017/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:24245/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:901804/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:993813/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:992008/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:962923/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:955892/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:945250/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:939811/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:938380/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:903757/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:221205/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:855592/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:848519/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:848423/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:843318/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:843094/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:824461/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:822357/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:1202425/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:133972/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:1339081/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:1329636/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:1313652/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:1303526/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:1281297/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:1209647/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:1203896/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:1347132/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:1200722/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:1154899/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:1149383/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:1134122/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:1128535/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:1015694/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:1002632/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:144671/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:205989/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:184383/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:179248/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:171479/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:163867/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:160803/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:154499/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:1468300/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:1001138/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:1445820/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:1444148/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:1443774/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:1417065/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:1405757/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:1368142/40‑1 (MQ=255)
tcCACCCAACAATATTCCTATATCATCGAAGCCTATTctg < 1:1217087/40‑1 (MQ=255)
ccACCCAACAATATTCCTATATCATCGCAGCCTATTctg < 1:1432718/39‑1 (MQ=255)
|
TCCACCCAACAGTATTCCTATATCATCGCAGCCTATTCTG > W3110S.gb/3244006‑3244045
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
