Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I2 R1
|
721 |
0.0 |
1472758 |
54.8% |
807071 |
56.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
3,610,587 |
T→C |
T369T (ACA→ACG) |
ubiD ← |
3‑octaprenyl‑4‑hydroxybenzoate decarboxylase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 3,610,587 | 0 | T | C | 100.0%
| 152.2
/ NA
| 54 | T369T (ACA→ACG) | ubiD | 3‑octaprenyl‑4‑hydroxybenzoate decarboxylase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (0/54); total (0/54) |
CAGACGCCCATCATGACGCGCTTCGCGTGTCCGGCGTACTGTTTTTTGATTGTCACTACCGC > W3110S.gb/3610537‑3610598
|
cAGACGCCCATCATGACGCGCTTCGCGTGTCCTGCGTACTGTTTTTTGATCGTCACTACCGc < 1:586491/62‑1 (MQ=255)
cAGACGCCCATCATGACGCGCTTCGCGTGTCCGGCGTACTGTTTTTTGATCGTCACTACCGc < 1:469207/62‑1 (MQ=255)
cAGACGCCCATCATGACGCGCTTCGCGTGTCCGGCGTACTGTTTTTTGATCGTCACTACCGc < 1:2638/62‑1 (MQ=255)
cAGACGCCCATCATGACGCGCTTCGCGTGTCCGGCGTACTGTTTTTTGATCGTCACTACCGc < 1:314957/62‑1 (MQ=255)
cAGACGCCCATCATGACGCGCTTCGCGTGTCCGGCGTACTGTTTTTTGATCGTCACTACCGc < 1:335880/62‑1 (MQ=255)
cAGACGCCCATCATGACGCGCTTCGCGTGTCCGGCGTACTGTTTTTTGATCGTCACTACCGc < 1:382347/62‑1 (MQ=255)
cAGACGCCCATCATGACGCGCTTCGCGTGTCCGGCGTACTGTTTTTTGATCGTCACTACCGc < 1:408381/62‑1 (MQ=255)
cAGACGCCCATCATGACGCGCTTCGCGTGTCCGGCGTACTGTTTTTTGATCGTCACTACCGc < 1:414156/62‑1 (MQ=255)
cAGACGCCCATCATGACGCGCTTCGCGTGTCCGGCGTACTGTTTTTTGATCGTCACTACCGc < 1:7737/62‑1 (MQ=255)
cAGACGCCCATCATGACGCGCTTCGCGTGTCCGGCGTACTGTTTTTTGATCGTCACTACCGc < 1:441978/62‑1 (MQ=255)
cAGACGCCCATCATGACGCGCTTCGCGTGTCCGGCGTACTGTTTTTTGATCGTCACTACCGc < 1:454043/62‑1 (MQ=255)
cAGACGCCCATCATGACGCGCTTCGCGTGTCCGGCGTACTGTTTTTTGATCGTCACTACCGc < 1:1080488/62‑1 (MQ=255)
cAGACGCCCATCATGACGCGCTTCGCGTGTCCGGCGTACTGTTTTTTGATCGTCACTACCGc < 1:534435/62‑1 (MQ=255)
cAGACGCCCATCATGACGCGCTTCGCGTGTCCGGCGTACTGTTTTTTGATCGTCACTACCGc < 1:560502/62‑1 (MQ=255)
cAGACGCCCATCATGACGCGCTTCGCGTGTCCGGCGTACTGTTTTTTGATCGTCACTACCGc < 1:561870/62‑1 (MQ=255)
cAGACGCCCATCATGACGCGCTTCGCGTGTCCGGCGTACTGTTTTTTGATCGTCACTACCGc < 1:731268/62‑1 (MQ=255)
cAGACGCCCATCATGACGCGCTTCGCGTGTCCGGCGTACTGTTTTTTGATCGTCACTACCGc < 1:657620/62‑1 (MQ=255)
cAGACGCCCATCATGACGCGCTTCGCGTGTCCGGCGTACTGTTTTTTGATCGTCACTACCGc < 1:688060/62‑1 (MQ=255)
cAGACGCCCATCATGACGCGCTTCGCGTGTCCGGCGTACTGTTTTTTGATCGTCACTACCGc < 1:699981/62‑1 (MQ=255)
cAGACGCCCATCATGACGCGCTTCGCGTGTCCGGCGTACTGTTTTTTGATCGTCACTACCGc < 1:1251946/62‑1 (MQ=255)
cAGACGCCCATCATGACGCGCTTCGCGTGTCCGGCGTACTGTTTTTTGATCGTCACTACCGc < 1:1096020/62‑1 (MQ=255)
cAGACGCCCATCATGACGCGCTTCGCGTGTCCGGCGTACTGTTTTTTGATCGTCACTACCGc < 1:1102286/62‑1 (MQ=255)
cAGACGCCCATCATGACGCGCTTCGCGTGTCCGGCGTACTGTTTTTTGATCGTCACTACCGc < 1:1136927/62‑1 (MQ=255)
cAGACGCCCATCATGACGCGCTTCGCGTGTCCGGCGTACTGTTTTTTGATCGTCACTACCGc < 1:981227/62‑1 (MQ=255)
cAGACGCCCATCATGACGCGCTTCGCGTGTCCGGCGTACTGTTTTTTGATCGTCACTACCGc < 1:973143/62‑1 (MQ=255)
cAGACGCCCATCATGACGCGCTTCGCGTGTCCGGCGTACTGTTTTTTGATCGTCACTACCGc < 1:970030/62‑1 (MQ=255)
cAGACGCCCATCATGACGCGCTTCGCGTGTCCGGCGTACTGTTTTTTGATCGTCACTACCGc < 1:1203968/62‑1 (MQ=255)
cAGACGCCCATCATGACGCGCTTCGCGTGTCCGGCGTACTGTTTTTTGATCGTCACTACCGc < 1:94851/62‑1 (MQ=255)
cAGACGCCCATCATGACGCGCTTCGCGTGTCCGGCGTACTGTTTTTTGATCGTCACTACCGc < 1:872520/62‑1 (MQ=255)
cAGACGCCCATCATGACGCGCTTCGCGTGTCCGGCGTACTGTTTTTTGATCGTCACTACCGc < 1:1350675/62‑1 (MQ=255)
cAGACGCCCATCATGACGCGCTTCGCGTGTCCGGCGTACTGTTTTTTGATCGTCACTACCGc < 1:1355269/62‑1 (MQ=255)
cAGACGCCCATCATGACGCGCTTCGCGTGTCCGGCGTACTGTTTTTTGATCGTCACTACCGc < 1:1358676/62‑1 (MQ=255)
cAGACGCCCATCATGACGCGCTTCGCGTGTCCGGCGTACTGTTTTTTGATCGTCACTACCGc < 1:1382491/62‑1 (MQ=255)
cAGACGCCCATCATGACGCGCTTCGCGTGTCCGGCGTACTGTTTTTTGATCGTCACTACCGc < 1:864020/62‑1 (MQ=255)
cAGACGCCCATCATGACGCGCTTCGCGTGTCCGGCGTACTGTTTTTTGATCGTCACTACCGc < 1:1414547/62‑1 (MQ=255)
cAGACGCCCATCATGACGCGCTTCGCGTGTCCGGCGTACTGTTTTTTGATCGTCACTACCGc < 1:857456/62‑1 (MQ=255)
cAGACGCCCATCATGACGCGCTTCGCGTGTCCGGCGTACTGTTTTTTGATCGTCACTACCGc < 1:1445945/62‑1 (MQ=255)
cAGACGCCCATCATGACGCGCTTCGCGTGTCAGGCGTACTGTTTTTTGATCGTCACTACCGc < 1:606788/62‑1 (MQ=255)
aGACGCCCATCATGACGCGCTTCGCGTGTCCGGCGTACTGTTTTTTGATCGTCACTACCGc < 1:441816/61‑1 (MQ=255)
aGACGCCCATCATGACGCGCTTCGCGTGTCCGGCGTACTGTTTTTTGATCGTCACTACCGc < 1:764163/61‑1 (MQ=255)
aGACGCCCATCATGACGCGCTTCGCGTGTCCGGCGTACTGTTTTTTGATCGTCACTACCGc < 1:827498/61‑1 (MQ=255)
aGACGCCCATCATGACGCGCTTCGCGTGTCCGGCGTACTGTTTTTTGATCGTCACTACCGc < 1:645179/61‑1 (MQ=255)
aGACGCCCATCATGACGCGCTTCGCGTGTCCGGCGTACTGTTTTTTGATCGTCACTACCGc < 1:572302/61‑1 (MQ=255)
aGACGCCCATCATGACGCGCTTCGCGTGTCCGGCGTACTGTTTTTTGATCGTCACTACCGc < 1:1008109/61‑1 (MQ=255)
aGACGCCCATCATGACGCGCTTCGCGTGTCCGGCGTACTGTTTTTTGATCGTCACTACCGc < 1:176292/61‑1 (MQ=255)
aGACGCCCATCATGACGCGCTTCGCGTGTCCGGCGTACTGTTTTTTGATCGTCACTACCGc < 1:1431672/61‑1 (MQ=255)
aGACGCCCATCATGACGCGCTTCGCGTGTCCGGCGTACTGTTTTTTGATCGTCACTACCGc < 1:1393062/61‑1 (MQ=255)
aGACGCCCATCATGACGCGCTTCGCGTGTCCGGCGTACTGTTTTTTGATCGTCACTACCGc < 1:1265776/61‑1 (MQ=255)
aGACGCCCATCATGACGCGCTTCGCGTGTCCGGCGTACTGTTTTTTGATCGTCACTACCGc < 1:1232120/61‑1 (MQ=255)
aGACGCCCATCATGACGCGCTTCGCGTGTCCGGCGTACTGTTTTTTGATCGTCACTACCGc < 1:1168453/61‑1 (MQ=255)
aGACGCCCATCATGACGCGCTTCGCGTGTCCGGCGTACTGTTTTTTGATCGTCACTACCGc < 1:1085234/61‑1 (MQ=255)
cccATCATGACGCGCTTCGCGTGTCCGGCGTACTGTTTTTTGATCGTCACTACCGc < 1:689828/56‑1 (MQ=255)
gACGCGCTTCGCGTGTCCGGCGTACTGTTTTTTGATCGTCACTACCGc < 1:990386/48‑1 (MQ=255)
aCGCGCTTCGCGTGTCCGGCGTACTGTTTTTTGATCGTCACTACCGc < 1:1188271/47‑1 (MQ=255)
|
CAGACGCCCATCATGACGCGCTTCGCGTGTCCGGCGTACTGTTTTTTGATTGTCACTACCGC > W3110S.gb/3610537‑3610598
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
