Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I2 R1
|
721 |
0.0 |
1472758 |
54.8% |
807071 |
56.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
3,771,117 |
C→A |
intergenic (‑77/‑24) |
cbrA ← / → yidR |
predicted oxidoreductase, FAD/NAD(P)‑binding domain/conserved hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 3,771,117 | 0 | C | A | 100.0%
| 104.0
/ NA
| 39 | intergenic (‑77/‑24) | cbrA/yidR | predicted oxidoreductase, FAD/NAD(P)‑binding domain/conserved hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base A (0/39); total (0/39) |
GTCTGAAAGTGAAGTCCTTGTGAAGTATGATGGCGGGACCCGTTTTGTATCAGGACCGCGCCATGAAACAGATAACC > W3110S.gb/3771079‑3771155
|
gTCTGAAAGTGAAGTCCTTGTGAAGTATGATGGCGGGAcc < 1:1220863/40‑1 (MQ=255)
gTCTGAAAGTGAAGTCCTTGTGAAGTATGATGGCGGGAcc < 1:100767/40‑1 (MQ=255)
gTCTGAAAGTGAAGTCCTTGTGAAGTATGATGGCGGGAcc < 1:1459653/40‑1 (MQ=255)
gTCTGAAAGTGAAGTCCTTGTGAAGTATGATGGCGGGAcc < 1:1254416/40‑1 (MQ=255)
gTCTGAAAGTGAAGTCCTTGTGAAGTATGATGGCGGGAcc < 1:1118586/40‑1 (MQ=255)
gTCTGAAAGTGAAGTCCTTGTGAAGTATGATGGCGGGAcc < 1:998290/40‑1 (MQ=255)
gTCTGAAAGTGAAGTCCTTGTGAAGTATGATGGCGGGAcc < 1:794071/40‑1 (MQ=255)
ccTTGTGAAGTATGATGGCGGGAACCGTTTTGTATCAGGACCACGCCATGAAACAGATAAcc < 1:61769/62‑1 (MQ=255)
ccTTGTGAAGTATGATGGCGGGAACCGTTTTGTATCAGGACCACGCCATGAAACAGATAAcc < 1:926181/62‑1 (MQ=255)
ccTTGTGAAGTATGATGGCGGGAACCGTTTTGTATCAGGACCACGCCATGAAACAGATAAcc < 1:469729/62‑1 (MQ=255)
ccTTGTGAAGTATGATGGCGGGAACCGTTTTGTATCAGGACCACGCCATGAAACAGATAAcc < 1:486456/62‑1 (MQ=255)
ccTTGTGAAGTATGATGGCGGGAACCGTTTTGTATCAGGACCACGCCATGAAACAGATAAcc < 1:494532/62‑1 (MQ=255)
ccTTGTGAAGTATGATGGCGGGAACCGTTTTGTATCAGGACCACGCCATGAAACAGATAAcc < 1:539872/62‑1 (MQ=255)
ccTTGTGAAGTATGATGGCGGGAACCGTTTTGTATCAGGACCACGCCATGAAACAGATAAcc < 1:55125/62‑1 (MQ=255)
ccTTGTGAAGTATGATGGCGGGAACCGTTTTGTATCAGGACCACGCCATGAAACAGATAAcc < 1:560005/62‑1 (MQ=255)
ccTTGTGAAGTATGATGGCGGGAACCGTTTTGTATCAGGACCACGCCATGAAACAGATAAcc < 1:572792/62‑1 (MQ=255)
ccTTGTGAAGTATGATGGCGGGAACCGTTTTGTATCAGGACCACGCCATGAAACAGATAAcc < 1:710907/62‑1 (MQ=255)
ccTTGTGAAGTATGATGGCGGGAACCGTTTTGTATCAGGACCACGCCATGAAACAGATAAcc < 1:8200/62‑1 (MQ=255)
ccTTGTGAAGTATGATGGCGGGAACCGTTTTGTATCAGGACCACGCCATGAAACAGATAAcc < 1:265683/62‑1 (MQ=255)
ccTTGTGAAGTATGATGGCGGGAACCGTTTTGTATCAGGACCACGCCATGAAACAGATAAcc < 1:632356/62‑1 (MQ=255)
ccTTGTGAAGTATGATGGCGGGAACCGTTTTGTATCAGGACCACGCCATGAAACAGATAAcc < 1:63541/62‑1 (MQ=255)
ccTTGTGAAGTATGATGGCGGGAACCGTTTTGTATCAGGACCACGCCATGAAACAGATAAcc < 1:666293/62‑1 (MQ=255)
ccTTGTGAAGTATGATGGCGGGAACCGTTTTGTATCAGGACCACGCCATGAAACAGATAAcc < 1:675512/62‑1 (MQ=255)
ccTTGTGAAGTATGATGGCGGGAACCGTTTTGTATCAGGACCACGCCATGAAACAGATAAcc < 1:683418/62‑1 (MQ=255)
ccTTGTGAAGTATGATGGCGGGAACCGTTTTGTATCAGGACCACGCCATGAAACAGATAAcc < 1:1161981/62‑1 (MQ=255)
ccTTGTGAAGTATGATGGCGGGAACCGTTTTGTATCAGGACCACGCCATGAAACAGATAAcc < 1:1014532/62‑1 (MQ=255)
ccTTGTGAAGTATGATGGCGGGAACCGTTTTGTATCAGGACCACGCCATGAAACAGATAAcc < 1:1023760/62‑1 (MQ=255)
ccTTGTGAAGTATGATGGCGGGAACCGTTTTGTATCAGGACCACGCCATGAAACAGATAAcc < 1:1061197/62‑1 (MQ=255)
ccTTGTGAAGTATGATGGCGGGAACCGTTTTGTATCAGGACCACGCCATGAAACAGATAAcc < 1:1072758/62‑1 (MQ=255)
ccTTGTGAAGTATGATGGCGGGAACCGTTTTGTATCAGGACCACGCCATGAAACAGATAAcc < 1:1103659/62‑1 (MQ=255)
ccTTGTGAAGTATGATGGCGGGAACCGTTTTGTATCAGGACCACGCCATGAAACAGATAAcc < 1:1110586/62‑1 (MQ=255)
ccTTGTGAAGTATGATGGCGGGAACCGTTTTGTATCAGGACCACGCCATGAAACAGATAAcc < 1:1131566/62‑1 (MQ=255)
ccTTGTGAAGTATGATGGCGGGAACCGTTTTGTATCAGGACCACGCCATGAAACAGATAAcc < 1:1154246/62‑1 (MQ=255)
ccTTGTGAAGTATGATGGCGGGAACCGTTTTGTATCAGGACCACGCCATGAAACAGATAAcc < 1:446594/62‑1 (MQ=255)
ccTTGTGAAGTATGATGGCGGGAACCGTTTTGTATCAGGACCACGCCATGAAACAGATAAcc < 1:1187236/62‑1 (MQ=255)
ccTTGTGAAGTATGATGGCGGGAACCGTTTTGTATCAGGACCACGCCATGAAACAGATAAcc < 1:1288589/62‑1 (MQ=255)
ccTTGTGAAGTATGATGGCGGGAACCGTTTTGTATCAGGACCACGCCATGAAACAGATAAcc < 1:1314429/62‑1 (MQ=255)
ccTTGTGAAGTATGATGGCGGGAACCGTTTTGTATCAGGACCACGCCATGAAACAGATAAcc < 1:1326944/62‑1 (MQ=255)
ccTTGTGAAGTATGATGGCGGGAACCGTTTTGTATCAGGACCACGCCATGAAACAGATAAcc < 1:13301/62‑1 (MQ=255)
ccTTGTGAAGTATGATGGCGGGAACCGTTTTGTATCAGGACCACGCCATGAAACAGATAAcc < 1:1364470/62‑1 (MQ=255)
ccTTGTGAAGTATGATGGCGGGAACCGTTTTGTATCAGGACCACGCCATGAAACAGATAAcc < 1:1376651/62‑1 (MQ=255)
ccTTGTGAAGTATGATGGCGGGAACCGTTTTGTATCAGGACCACGCCATGAAACAGATAAcc < 1:1411874/62‑1 (MQ=255)
ccTTGTGAAGTATGATGGCGGGAACCGTTTTGTATCAGGACCACGCCATGAAACAGATAAcc < 1:1447657/62‑1 (MQ=255)
cTTGTGAAGTATGATGGCGGGAACCGTTTTGTATCAGGACCACGCCATGAAACAGATAAcc < 1:735513/61‑1 (MQ=255)
cTTGTGAAGTATGATGGCGGGAACCGTTTTGTATCAGGACCACGCCATGAAACAGATAAcc < 1:837046/61‑1 (MQ=255)
tgAAGTATGATGGCGGGAACCGTTTTGTATCAGGACCACGCCATGAAACAGATAAcc < 1:476976/57‑1 (MQ=255)
|
GTCTGAAAGTGAAGTCCTTGTGAAGTATGATGGCGGGACCCGTTTTGTATCAGGACCGCGCCATGAAACAGATAACC > W3110S.gb/3771079‑3771155
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
