Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I1 R1
|
826 |
0.0 |
88706 |
74.7% |
66263 |
57.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
477,718 |
C→T |
D42N (GAT→AAT) |
ylaB ← |
conserved inner membrane protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 477,718 | 0 | C | T | 100.0%
| 187.3
/ NA
| 103 | D42N (GAT→AAT) | ylaB | conserved inner membrane protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (0/103); total (0/103) |
Only 100 of 103 total aligned reads displayed.
TCGCCACCTTATTGGCTCGAATAGCGACGCGGGAGGAATAGGTATCCAGCTCTTCAATAAAC > W3110S.gb/477673‑477734
|
tCGCCTCCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:69475/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:64456/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:71683/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:71578/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:7027/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:70247/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:70086/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:68045/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:67797/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:67044/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:6689/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:65854/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:72826/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:64203/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:63688/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:62560/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:62533/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:62377/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:6222/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:6030/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:59343/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:59130/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:56311/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:5433/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:79851/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:8709/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:86165/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:85910/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:85909/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:85788/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:84241/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:84206/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:82844/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:82601/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:82035/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:80144/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:10876/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:77408/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:76073/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:75932/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:7577/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:75683/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:75624/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:7474/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:7439/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:74260/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:73865/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:21063/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:31273/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:30686/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:28699/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:28397/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:26903/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:25260/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:24938/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:24320/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:23061/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:22156/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:21579/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:5337/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:20698/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:19729/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:19656/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:17783/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:16479/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:14110/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:14049/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:13383/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:1238/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:11560/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:10769/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:32408/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:5373/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:5225/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:51313/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:50109/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:49450/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:48922/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:48757/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:48653/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:46182/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:45433/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:4322/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:31912/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:34653/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:35050/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:35485/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:36961/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:38549/62‑2 (MQ=255)
tCGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:3987/62‑2 (MQ=255)
cGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaatt < 1:82180/61‑3 (MQ=255)
cGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:61982/61‑2 (MQ=255)
cGCCACCTTATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:70197/61‑2 (MQ=255)
tATTGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:81877/53‑2 (MQ=255)
ttGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:1780/51‑2 (MQ=255)
ttGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:45245/51‑2 (MQ=255)
tGGCCCGAATAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:80325/50‑2 (MQ=255)
aTAGCGACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:66045/42‑2 (MQ=38)
tAGCGACGCGGGAGGAATACGTATTCAGCTCTTCATTaaat < 1:11287/41‑2 (MQ=37)
gACGCGGGAGGAATACGTATTCAGCTCTTCAATaaat < 1:87684/37‑2 (MQ=37)
|
TCGCCACCTTATTGGCTCGAATAGCGACGCGGGAGGAATAGGTATCCAGCTCTTCAATAAAC > W3110S.gb/477673‑477734
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
