Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I1 R1
|
826 |
0.0 |
88706 |
74.7% |
66263 |
57.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
2,124,787 |
A→C |
V110V (GTT→GTG) |
cpsG ← |
phosphomannomutase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 2,124,787 | 0 | A | C | 100.0%
| 77.6
/ NA
| 42 | V110V (GTT→GTG) | cpsG | phosphomannomutase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base C (42/0); total (42/0) |
CGGGCGAGCCCCCTCGCGAACCAGCTTCATGCCGTTATAATCC > W3110S.gb/2124769‑2124811
|
cGGGCGAGCCCCTTCGCGCCCCAGTTTCATGCCGTTGTAATcc > 1:49532/1‑43 (MQ=19)
cGGGCGAGCCCCTTCGCGCCCCAGTTTCATGCCGTTGTAATcc > 1:3897/1‑43 (MQ=19)
cGGGCGAGCCCCTTCGCGCACCAGTTTCGTGCCGTTGTAATcc > 1:31135/1‑43 (MQ=16)
cGGGCGAGCCCCTTCGCGCACCAGTTTCATGCCGTTGTAATcc > 1:6145/1‑43 (MQ=25)
cGGGCGAGCCCCTTCGCGCACCAGTTTCATGCCGTTGTAATcc > 1:55668/1‑43 (MQ=25)
cGGGCGAGCCCCTTCGCGCACCAGTTTCATGCCGTTGTAATcc > 1:63432/1‑43 (MQ=25)
cGGGCGAGCCCCTTCGCGCACCAGTTTCATGCCGTTGTAATcc > 1:6370/1‑43 (MQ=25)
cGGGCGAGCCCCTTCGCGCACCAGTTTCATGCCGTTGTAATcc > 1:64743/1‑43 (MQ=25)
cGGGCGAGCCCCTTCGCGCACCAGTTTCATGCCGTTGTAATcc > 1:67874/1‑43 (MQ=25)
cGGGCGAGCCCCTTCGCGCACCAGTTTCATGCCGTTGTAATcc > 1:727/1‑43 (MQ=25)
cGGGCGAGCCCCTTCGCGCACCAGTTTCATGCCGTTGTAATcc > 1:72798/1‑43 (MQ=25)
cGGGCGAGCCCCTTCGCGCACCAGTTTCATGCCGTTGTAATcc > 1:73152/1‑43 (MQ=25)
cGGGCGAGCCCCTTCGCGCACCAGTTTCATGCCGTTGTAATcc > 1:7593/1‑43 (MQ=25)
cGGGCGAGCCCCTTCGCGCACCAGTTTCATGCCGTTGTAATcc > 1:78834/1‑43 (MQ=25)
cGGGCGAGCCCCTTCGCGCACCAGTTTCATGCCGTTGTAATcc > 1:79049/1‑43 (MQ=25)
cGGGCGAGCCCCTTCGCGCACCAGTTTCATGCCGTTGTAATcc > 1:79175/1‑43 (MQ=25)
cGGGCGAGCCCCTTCGCGCACCAGTTTCATGCCGTTGTAATcc > 1:80024/1‑43 (MQ=25)
cGGGCGAGCCCCTTCGCGCACCAGTTTCATGCCGTTGTAATcc > 1:81956/1‑43 (MQ=25)
cGGGCGAGCCCCTTCGCGCACCAGTTTCATGCCGTTGTAATcc > 1:82308/1‑43 (MQ=25)
cGGGCGAGCCCCTTCGCGCACCAGTTTCATGCCGTTGTAATcc > 1:82936/1‑43 (MQ=25)
cGGGCGAGCCCCTTCGCGCACCAGTTTCATGCCGTTGTAATcc > 1:8295/1‑43 (MQ=25)
cGGGCGAGCCCCTTCGCGCACCAGTTTCATGCCGTTGTAATcc > 1:85538/1‑43 (MQ=25)
cGGGCGAGCCCCTTCGCGCACCAGTTTCATGCCGTTGTAATcc > 1:9872/1‑43 (MQ=25)
cGGGCGAGCCCCTTCGCGCACCAGTTTCATGCCGTTGTAATcc > 1:4115/1‑43 (MQ=25)
cGGGCGAGCCCCTTCGCGCACCAGTTTCATGCCGTTGTAATcc > 1:15272/1‑43 (MQ=25)
cGGGCGAGCCCCTTCGCGCACCAGTTTCATGCCGTTGTAATcc > 1:16773/1‑43 (MQ=25)
cGGGCGAGCCCCTTCGCGCACCAGTTTCATGCCGTTGTAATcc > 1:18574/1‑43 (MQ=25)
cGGGCGAGCCCCTTCGCGCACCAGTTTCATGCCGTTGTAATcc > 1:20371/1‑43 (MQ=25)
cGGGCGAGCCCCTTCGCGCACCAGTTTCATGCCGTTGTAATcc > 1:2207/1‑43 (MQ=25)
cGGGCGAGCCCCTTCGCGCACCAGTTTCATGCCGTTGTAATcc > 1:24514/1‑43 (MQ=25)
cGGGCGAGCCCCTTCGCGCACCAGTTTCATGCCGTTGTAATcc > 1:29684/1‑43 (MQ=25)
cGGGCGAGCCCCTTCGCGCACCAGTTTCATGCCGTTGTAATcc > 1:35679/1‑43 (MQ=25)
cGGGCGAGCCCCTTCGCGCACCAGTTTCATGCCGTTGTAATcc > 1:37940/1‑43 (MQ=25)
cGGGCGAGCCCCTTCGCGCACCAGTTTCATGCCGTTGTAATcc > 1:58020/1‑43 (MQ=25)
cGGGCGAGCCCCTTCGCGCACCAGTTTCATGCCGTTGTAATcc > 1:42051/1‑43 (MQ=25)
cGGGCGAGCCCCTTCGCGCACCAGTTTCATGCCGTTGTAATcc > 1:42528/1‑43 (MQ=25)
cGGGCGAGCCCCTTCGCGCACCAGTTTCATGCCGTTGTAATcc > 1:42998/1‑43 (MQ=25)
cGGGCGAGCCCCTTCGCGCACCAGTTTCATGCCGTTGTAATcc > 1:45300/1‑43 (MQ=25)
cGGGCGAGCCCCTTCGCGCACCAGTTTCATGCCGTTGTAATcc > 1:46202/1‑43 (MQ=25)
cGGGCGAGCCCCTTCGCGCACCAGTTTCATGCCGTTGTAATcc > 1:48723/1‑43 (MQ=25)
cGGGCGAGCCCCTTCGCGCACCAGTTTCATGCCGTTGTAATcc > 1:52099/1‑43 (MQ=25)
cGGGCGAGCCCCTTCGCGCACCAGTTTCATGCCGTTGTAATcc > 1:10230/1‑43 (MQ=25)
|
CGGGCGAGCCCCCTCGCGAACCAGCTTCATGCCGTTATAATCC > W3110S.gb/2124769‑2124811
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
