Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I1 R1
|
826 |
0.0 |
88706 |
74.7% |
66263 |
57.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
2,469,740 |
T→C |
A238A (GCA→GCG) |
vacJ ← |
predicted lipoprotein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 2,469,740 | 0 | T | C | 100.0%
| 115.3
/ NA
| 62 | A238A (GCA→GCG) | vacJ | predicted lipoprotein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (0/62); total (0/62) |
TTCTTATTCAGAATCAATATCTTTTAAATCATCCTGAATCGCTTGTGCGTTCGGATTTTCC > W3110S.gb/2469695‑2469755
|
ttCTTATTCAGAATCGATATCTTTTCAATCATCCTGAATCGCTTGCGCGTTCGGATTTTcc < 1:5723/61‑1 (MQ=255)
ttCTTATTCAGAATCGATATCTTTTAAATCATCCTTAATCGCTTGCGCGTTCGGATTTTcc < 1:66996/61‑1 (MQ=255)
ttCTTATTCAGAATCGATATCTTTTAAATCATCCTGAATCGCTTGCGCGTTCGGATTTTcc < 1:76045/61‑1 (MQ=255)
ttCTTATTCAGAATCGATATCTTTTAAATCATCCTGAATCGCTTGCGCGTTCGGATTTTcc < 1:57845/61‑1 (MQ=255)
ttCTTATTCAGAATCGATATCTTTTAAATCATCCTGAATCGCTTGCGCGTTCGGATTTTcc < 1:58820/61‑1 (MQ=255)
ttCTTATTCAGAATCGATATCTTTTAAATCATCCTGAATCGCTTGCGCGTTCGGATTTTcc < 1:6079/61‑1 (MQ=255)
ttCTTATTCAGAATCGATATCTTTTAAATCATCCTGAATCGCTTGCGCGTTCGGATTTTcc < 1:64272/61‑1 (MQ=255)
ttCTTATTCAGAATCGATATCTTTTAAATCATCCTGAATCGCTTGCGCGTTCGGATTTTcc < 1:64362/61‑1 (MQ=255)
ttCTTATTCAGAATCGATATCTTTTAAATCATCCTGAATCGCTTGCGCGTTCGGATTTTcc < 1:65268/61‑1 (MQ=255)
ttCTTATTCAGAATCGATATCTTTTAAATCATCCTGAATCGCTTGCGCGTTCGGATTTTcc < 1:66088/61‑1 (MQ=255)
ttCTTATTCAGAATCGATATCTTTTAAATCATCCTGAATCGCTTGCGCGTTCGGATTTTcc < 1:67821/61‑1 (MQ=255)
ttCTTATTCAGAATCGATATCTTTTAAATCATCCTGAATCGCTTGCGCGTTCGGATTTTcc < 1:70142/61‑1 (MQ=255)
ttCTTATTCAGAATCGATATCTTTTAAATCATCCTGAATCGCTTGCGCGTTCGGATTTTcc < 1:70753/61‑1 (MQ=255)
ttCTTATTCAGAATCGATATCTTTTAAATCATCCTGAATCGCTTGCGCGTTCGGATTTTcc < 1:71700/61‑1 (MQ=255)
ttCTTATTCAGAATCGATATCTTTTAAATCATCCTGAATCGCTTGCGCGTTCGGATTTTcc < 1:73864/61‑1 (MQ=255)
ttCTTATTCAGAATCGATATCTTTTAAATCATCCTGAATCGCTTGCGCGTTCGGATTTTcc < 1:75085/61‑1 (MQ=255)
ttCTTATTCAGAATCGATATCTTTTAAATCATCCTGAATCGCTTGCGCGTTCGGATTTTcc < 1:5473/61‑1 (MQ=255)
ttCTTATTCAGAATCGATATCTTTTAAATCATCCTGAATCGCTTGCGCGTTCGGATTTTcc < 1:77498/61‑1 (MQ=255)
ttCTTATTCAGAATCGATATCTTTTAAATCATCCTGAATCGCTTGCGCGTTCGGATTTTcc < 1:78705/61‑1 (MQ=255)
ttCTTATTCAGAATCGATATCTTTTAAATCATCCTGAATCGCTTGCGCGTTCGGATTTTcc < 1:80462/61‑1 (MQ=255)
ttCTTATTCAGAATCGATATCTTTTAAATCATCCTGAATCGCTTGCGCGTTCGGATTTTcc < 1:80532/61‑1 (MQ=255)
ttCTTATTCAGAATCGATATCTTTTAAATCATCCTGAATCGCTTGCGCGTTCGGATTTTcc < 1:81285/61‑1 (MQ=255)
ttCTTATTCAGAATCGATATCTTTTAAATCATCCTGAATCGCTTGCGCGTTCGGATTTTcc < 1:81551/61‑1 (MQ=255)
ttCTTATTCAGAATCGATATCTTTTAAATCATCCTGAATCGCTTGCGCGTTCGGATTTTcc < 1:83218/61‑1 (MQ=255)
ttCTTATTCAGAATCGATATCTTTTAAATCATCCTGAATCGCTTGCGCGTTCGGATTTTcc < 1:83838/61‑1 (MQ=255)
ttCTTATTCAGAATCGATATCTTTTAAATCATCCTGAATCGCTTGCGCGTTCGGATTTTcc < 1:84209/61‑1 (MQ=255)
ttCTTATTCAGAATCGATATCTTTTAAATCATCCTGAATCGCTTGCGCGTTCGGATTTTcc < 1:85121/61‑1 (MQ=255)
ttCTTATTCAGAATCGATATCTTTTAAATCATCCTGAATCGCTTGCGCGTTCGGATTTTcc < 1:85821/61‑1 (MQ=255)
ttCTTATTCAGAATCGATATCTTTTAAATCATCCTGAATCGCTTGCGCGTTCGGATTTTcc < 1:86856/61‑1 (MQ=255)
ttCTTATTCAGAATCGATATCTTTTAAATCATCCTGAATCGCTTGCGCGTTCGGATTTTcc < 1:86986/61‑1 (MQ=255)
ttCTTATTCAGAATCGATATCTTTTAAATCATCCTGAATCGCTTGCGCGTTCGGATTTTcc < 1:88642/61‑1 (MQ=255)
ttCTTATTCAGAATCGATATCTTTTAAATCATCCTGAATCGCTTGCGCGTTCGGATTTTcc < 1:33438/61‑1 (MQ=255)
ttCTTATTCAGAATCGATATCTTTTAAATCATCCTGAATCGCTTGCGCGTTCGGATTTTcc < 1:11232/61‑1 (MQ=255)
ttCTTATTCAGAATCGATATCTTTTAAATCATCCTGAATCGCTTGCGCGTTCGGATTTTcc < 1:13998/61‑1 (MQ=255)
ttCTTATTCAGAATCGATATCTTTTAAATCATCCTGAATCGCTTGCGCGTTCGGATTTTcc < 1:16250/61‑1 (MQ=255)
ttCTTATTCAGAATCGATATCTTTTAAATCATCCTGAATCGCTTGCGCGTTCGGATTTTcc < 1:17928/61‑1 (MQ=255)
ttCTTATTCAGAATCGATATCTTTTAAATCATCCTGAATCGCTTGCGCGTTCGGATTTTcc < 1:20276/61‑1 (MQ=255)
ttCTTATTCAGAATCGATATCTTTTAAATCATCCTGAATCGCTTGCGCGTTCGGATTTTcc < 1:2069/61‑1 (MQ=255)
ttCTTATTCAGAATCGATATCTTTTAAATCATCCTGAATCGCTTGCGCGTTCGGATTTTcc < 1:21510/61‑1 (MQ=255)
ttCTTATTCAGAATCGATATCTTTTAAATCATCCTGAATCGCTTGCGCGTTCGGATTTTcc < 1:21621/61‑1 (MQ=255)
ttCTTATTCAGAATCGATATCTTTTAAATCATCCTGAATCGCTTGCGCGTTCGGATTTTcc < 1:21756/61‑1 (MQ=255)
ttCTTATTCAGAATCGATATCTTTTAAATCATCCTGAATCGCTTGCGCGTTCGGATTTTcc < 1:22738/61‑1 (MQ=255)
ttCTTATTCAGAATCGATATCTTTTAAATCATCCTGAATCGCTTGCGCGTTCGGATTTTcc < 1:27216/61‑1 (MQ=255)
ttCTTATTCAGAATCGATATCTTTTAAATCATCCTGAATCGCTTGCGCGTTCGGATTTTcc < 1:28901/61‑1 (MQ=255)
ttCTTATTCAGAATCGATATCTTTTAAATCATCCTGAATCGCTTGCGCGTTCGGATTTTcc < 1:32620/61‑1 (MQ=255)
ttCTTATTCAGAATCGATATCTTTTAAATCATCCTGAATCGCTTGCGCGTTCGGATTTTcc < 1:32917/61‑1 (MQ=255)
ttCTTATTCAGAATCGATATCTTTTAAATCATCCTGAATCGCTTGCGCGTTCGGATTTTcc < 1:10643/61‑1 (MQ=255)
ttCTTATTCAGAATCGATATCTTTTAAATCATCCTGAATCGCTTGCGCGTTCGGATTTTcc < 1:34051/61‑1 (MQ=255)
ttCTTATTCAGAATCGATATCTTTTAAATCATCCTGAATCGCTTGCGCGTTCGGATTTTcc < 1:34344/61‑1 (MQ=255)
ttCTTATTCAGAATCGATATCTTTTAAATCATCCTGAATCGCTTGCGCGTTCGGATTTTcc < 1:34813/61‑1 (MQ=255)
ttCTTATTCAGAATCGATATCTTTTAAATCATCCTGAATCGCTTGCGCGTTCGGATTTTcc < 1:35145/61‑1 (MQ=255)
ttCTTATTCAGAATCGATATCTTTTAAATCATCCTGAATCGCTTGCGCGTTCGGATTTTcc < 1:36903/61‑1 (MQ=255)
ttCTTATTCAGAATCGATATCTTTTAAATCATCCTGAATCGCTTGCGCGTTCGGATTTTcc < 1:40877/61‑1 (MQ=255)
ttCTTATTCAGAATCGATATCTTTTAAATCATCCTGAATCGCTTGCGCGTTCGGATTTTcc < 1:41035/61‑1 (MQ=255)
ttCTTATTCAGAATCGATATCTTTTAAATCATCCTGAATCGCTTGCGCGTTCGGATTTTcc < 1:42621/61‑1 (MQ=255)
ttCTTATTCAGAATCGATATCTTTTAAATCATCCTGAATCGCTTGCGCGTTCGGATTTTcc < 1:4621/61‑1 (MQ=255)
ttCTTATTCAGAATCGATATCTTTTAAATCATCCTGAATCGCTTGCGCGTTCGGATTTTcc < 1:48011/61‑1 (MQ=255)
ttCTTATTCAGAATCGATATCTTTTAAATCATCCTGAATCGCTTGCGCGTTCGGATTTTcc < 1:48692/61‑1 (MQ=255)
ttCTTATTCAGAATCGATATCTTTTAAATCATCCTGAATCGCTTGCGCGTTCGGATTTTcc < 1:4925/61‑1 (MQ=255)
ttCTTATTCAGAATCGATATCTTTTAAATCATCCTGAATCGCTTGCGCGTTCGGATTTTcc < 1:50235/61‑1 (MQ=255)
tCTTATTCAGAATCGATATCTTTTAAATCATCCTGAATCGCTTGCGCGTTCGGATTTTcc < 1:33401/60‑1 (MQ=255)
tCTTTTAAATCATCCTGAATCGCTTGCGCGTGCGGATTTTcc < 1:34363/42‑1 (MQ=38)
|
TTCTTATTCAGAATCAATATCTTTTAAATCATCCTGAATCGCTTGTGCGTTCGGATTTTCC > W3110S.gb/2469695‑2469755
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
