Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I1 R1
|
826 |
0.0 |
88706 |
74.7% |
66263 |
57.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
2,811,433 |
A→G |
V54V (GTA→GTG) |
emrB → |
multidrug efflux system protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 2,811,433 | 0 | A | G | 100.0%
| 75.6
/ NA
| 42 | V54V (GTA→GTG) | emrB | multidrug efflux system protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (42/0); total (42/0) |
GAATCTGGGCTCATCGCTCAGCCAGGGAACGTGGGTAATCAC > W3110S.gb/2811397‑2811438
|
gAATCTGGGCTCATCACTCAGTCAGGGAACGTGGGTGAt > 1:15311/1‑39 (MQ=37)
gAATCTGGGCTCATCACTCAGTCAGGGAACGTGGGTGATCa > 1:37925/1‑41 (MQ=37)
gAATCTGGGCTCATCACTCAGTCAGGGAACGTGGGTGATCa > 1:33435/1‑41 (MQ=37)
gAATCTGGGCTCATCACTCAGTCAGGGAACGTGGGTGATCAc > 1:6997/1‑42 (MQ=37)
gAATCTGGGCTCATCACTCAGTCAGGGAACGTGGGTGATCAc > 1:60278/1‑42 (MQ=37)
gAATCTGGGCTCATCACTCAGTCAGGGAACGTGGGTGATCAc > 1:60463/1‑42 (MQ=37)
gAATCTGGGCTCATCACTCAGTCAGGGAACGTGGGTGATCAc > 1:60752/1‑42 (MQ=37)
gAATCTGGGCTCATCACTCAGTCAGGGAACGTGGGTGATCAc > 1:60870/1‑42 (MQ=37)
gAATCTGGGCTCATCACTCAGTCAGGGAACGTGGGTGATCAc > 1:61271/1‑42 (MQ=37)
gAATCTGGGCTCATCACTCAGTCAGGGAACGTGGGTGATCAc > 1:62158/1‑42 (MQ=37)
gAATCTGGGCTCATCACTCAGTCAGGGAACGTGGGTGATCAc > 1:66808/1‑42 (MQ=37)
gAATCTGGGCTCATCACTCAGTCAGGGAACGTGGGTGATCAc > 1:6693/1‑42 (MQ=37)
gAATCTGGGCTCATCACTCAGTCAGGGAACGTGGGTGATCAc > 1:6804/1‑42 (MQ=37)
gAATCTGGGCTCATCACTCAGTCAGGGAACGTGGGTGATCAc > 1:56476/1‑42 (MQ=37)
gAATCTGGGCTCATCACTCAGTCAGGGAACGTGGGTGATCAc > 1:7097/1‑42 (MQ=37)
gAATCTGGGCTCATCACTCAGTCAGGGAACGTGGGTGATCAc > 1:71138/1‑42 (MQ=37)
gAATCTGGGCTCATCACTCAGTCAGGGAACGTGGGTGATCAc > 1:75955/1‑42 (MQ=37)
gAATCTGGGCTCATCACTCAGTCAGGGAACGTGGGTGATCAc > 1:80673/1‑42 (MQ=37)
gAATCTGGGCTCATCACTCAGTCAGGGAACGTGGGTGATCAc > 1:80820/1‑42 (MQ=37)
gAATCTGGGCTCATCACTCAGTCAGGGAACGTGGGTGATCAc > 1:81194/1‑42 (MQ=37)
gAATCTGGGCTCATCACTCAGTCAGGGAACGTGGGTGATCAc > 1:82455/1‑42 (MQ=37)
gAATCTGGGCTCATCACTCAGTCAGGGAACGTGGGTGATCAc > 1:8600/1‑42 (MQ=37)
gAATCTGGGCTCATCACTCAGTCAGGGAACGTGGGTGATCAc > 1:9485/1‑42 (MQ=37)
gAATCTGGGCTCATCACTCAGTCAGGGAACGTGGGTGATCAc > 1:29722/1‑42 (MQ=37)
gAATCTGGGCTCATCACTCAGTCAGGGAACGTGGGTGATCAc > 1:11658/1‑42 (MQ=37)
gAATCTGGGCTCATCACTCAGTCAGGGAACGTGGGTGATCAc > 1:11684/1‑42 (MQ=37)
gAATCTGGGCTCATCACTCAGTCAGGGAACGTGGGTGATCAc > 1:16119/1‑42 (MQ=37)
gAATCTGGGCTCATCACTCAGTCAGGGAACGTGGGTGATCAc > 1:18660/1‑42 (MQ=37)
gAATCTGGGCTCATCACTCAGTCAGGGAACGTGGGTGATCAc > 1:21945/1‑42 (MQ=37)
gAATCTGGGCTCATCACTCAGTCAGGGAACGTGGGTGATCAc > 1:22148/1‑42 (MQ=37)
gAATCTGGGCTCATCACTCAGTCAGGGAACGTGGGTGATCAc > 1:23636/1‑42 (MQ=37)
gAATCTGGGCTCATCACTCAGTCAGGGAACGTGGGTGATCAc > 1:23959/1‑42 (MQ=37)
gAATCTGGGCTCATCACTCAGTCAGGGAACGTGGGTGATCAc > 1:28359/1‑42 (MQ=37)
gAATCTGGGCTCATCACTCAGTCAGGGAACGTGGGTGATCAc > 1:58741/1‑42 (MQ=37)
gAATCTGGGCTCATCACTCAGTCAGGGAACGTGGGTGATCAc > 1:40834/1‑42 (MQ=37)
gAATCTGGGCTCATCACTCAGTCAGGGAACGTGGGTGATCAc > 1:42301/1‑42 (MQ=37)
gAATCTGGGCTCATCACTCAGTCAGGGAACGTGGGTGATCAc > 1:50641/1‑42 (MQ=37)
gAATCTGGGCTCATCACTCAGTCAGGGAACGTGGGTGATCAc > 1:51160/1‑42 (MQ=37)
gAATCTGGGCTCATCACTCAGTCAGGGAACGTGGGTGATCAc > 1:54239/1‑42 (MQ=37)
gAATCTGGGCTCATCACTCAGTCAGGGAACGTGGGTGATCAc > 1:55484/1‑42 (MQ=37)
gAATCTGGGCTCATCACTCAGTCAGGGAACGTGGGTGATCAc > 1:55953/1‑42 (MQ=37)
gAATCTGGGCTCATCACTCAGTCAGGGAACGTGGGTGATCAc > 1:10258/1‑42 (MQ=37)
|
GAATCTGGGCTCATCGCTCAGCCAGGGAACGTGGGTAATCAC > W3110S.gb/2811397‑2811438
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
