Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I1 R1
|
826 |
0.0 |
88706 |
74.7% |
66263 |
57.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
2,816,016 |
T→G |
G48G (GGA→GGC) |
yqaB ← |
predicted hydrolase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 2,816,016 | 0 | T | G | 100.0%
| 74.8
/ NA
| 40 | G48G (GGA→GGC) | yqaB | predicted hydrolase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base G (0/40); total (0/40) |
ATCGGCCTGATTCAGCTCAATAATTGCCTGAGCAATACGCCAGGTGGGCGATCCATTAAGCG > W3110S.gb/2815965‑2816026
|
agcGGCCTGATTCAGCTCAATAATCGCCTGAGCAATACGCCAGGTGGGCGAGCCATTAAgcg < 1:1804/60‑1 (MQ=255)
aTCGGCCTGATTCAGCTCAATAATCGCCTGAGCAATACGCCAGGTGGGCGAGCCATTAAgcg < 1:68970/62‑1 (MQ=255)
aTCGGCCTGATTCAGCTCAATAATCGCCTGAGCAATACGCCAGGTGGGCGAGCCATTAAgcg < 1:14508/62‑1 (MQ=255)
aTCGGCCTGATTCAGCTCAATAATCGCCTGAGCAATACGCCAGGTGGGCGAGCCATTAAgcg < 1:45457/62‑1 (MQ=255)
aTCGGCCTGATTCAGCTCAATAATCGCCTGAGCAATACGCCAGGTGGGCGAGCCATTAAgcg < 1:46866/62‑1 (MQ=255)
aTCGGCCTGATTCAGCTCAATAATCGCCTGAGCAATACGCCAGGTGGGCGAGCCATTAAgcg < 1:47950/62‑1 (MQ=255)
aTCGGCCTGATTCAGCTCAATAATCGCCTGAGCAATACGCCAGGTGGGCGAGCCATTAAgcg < 1:48451/62‑1 (MQ=255)
aTCGGCCTGATTCAGCTCAATAATCGCCTGAGCAATACGCCAGGTGGGCGAGCCATTAAgcg < 1:56907/62‑1 (MQ=255)
aTCGGCCTGATTCAGCTCAATAATCGCCTGAGCAATACGCCAGGTGGGCGAGCCATTAAgcg < 1:63672/62‑1 (MQ=255)
aTCGGCCTGATTCAGCTCAATAATCGCCTGAGCAATACGCCAGGTGGGCGAGCCATTAAgcg < 1:65196/62‑1 (MQ=255)
aTCGGCCTGATTCAGCTCAATAATCGCCTGAGCAATACGCCAGGTGGGCGAGCCATTAAgcg < 1:66115/62‑1 (MQ=255)
aTCGGCCTGATTCAGCTCAATAATCGCCTGAGCAATACGCCAGGTGGGCGAGCCATTAAgcg < 1:43569/62‑1 (MQ=255)
aTCGGCCTGATTCAGCTCAATAATCGCCTGAGCAATACGCCAGGTGGGCGAGCCATTAAgcg < 1:70828/62‑1 (MQ=255)
aTCGGCCTGATTCAGCTCAATAATCGCCTGAGCAATACGCCAGGTGGGCGAGCCATTAAgcg < 1:74236/62‑1 (MQ=255)
aTCGGCCTGATTCAGCTCAATAATCGCCTGAGCAATACGCCAGGTGGGCGAGCCATTAAgcg < 1:74397/62‑1 (MQ=255)
aTCGGCCTGATTCAGCTCAATAATCGCCTGAGCAATACGCCAGGTGGGCGAGCCATTAAgcg < 1:74663/62‑1 (MQ=255)
aTCGGCCTGATTCAGCTCAATAATCGCCTGAGCAATACGCCAGGTGGGCGAGCCATTAAgcg < 1:76037/62‑1 (MQ=255)
aTCGGCCTGATTCAGCTCAATAATCGCCTGAGCAATACGCCAGGTGGGCGAGCCATTAAgcg < 1:77995/62‑1 (MQ=255)
aTCGGCCTGATTCAGCTCAATAATCGCCTGAGCAATACGCCAGGTGGGCGAGCCATTAAgcg < 1:87678/62‑1 (MQ=255)
aTCGGCCTGATTCAGCTCAATAATCGCCTGAGCAATACGCCAGGTGGGCGAGCCATTAAgcg < 1:41098/62‑1 (MQ=255)
aTCGGCCTGATTCAGCTCAATAATCGCCTGAGCAATACGCCAGGTGGGCGAGCCATTAAgcg < 1:16377/62‑1 (MQ=255)
aTCGGCCTGATTCAGCTCAATAATCGCCTGAGCAATACGCCAGGTGGGCGAGCCATTAAgcg < 1:16726/62‑1 (MQ=255)
aTCGGCCTGATTCAGCTCAATAATCGCCTGAGCAATACGCCAGGTGGGCGAGCCATTAAgcg < 1:19211/62‑1 (MQ=255)
aTCGGCCTGATTCAGCTCAATAATCGCCTGAGCAATACGCCAGGTGGGCGAGCCATTAAgcg < 1:205/62‑1 (MQ=255)
aTCGGCCTGATTCAGCTCAATAATCGCCTGAGCAATACGCCAGGTGGGCGAGCCATTAAgcg < 1:2098/62‑1 (MQ=255)
aTCGGCCTGATTCAGCTCAATAATCGCCTGAGCAATACGCCAGGTGGGCGAGCCATTAAgcg < 1:21185/62‑1 (MQ=255)
aTCGGCCTGATTCAGCTCAATAATCGCCTGAGCAATACGCCAGGTGGGCGAGCCATTAAgcg < 1:23253/62‑1 (MQ=255)
aTCGGCCTGATTCAGCTCAATAATCGCCTGAGCAATACGCCAGGTGGGCGAGCCATTAAgcg < 1:24981/62‑1 (MQ=255)
aTCGGCCTGATTCAGCTCAATAATCGCCTGAGCAATACGCCAGGTGGGCGAGCCATTAAgcg < 1:2874/62‑1 (MQ=255)
aTCGGCCTGATTCAGCTCAATAATCGCCTGAGCAATACGCCAGGTGGGCGAGCCATTAAgcg < 1:3103/62‑1 (MQ=255)
aTCGGCCTGATTCAGCTCAATAATCGCCTGAGCAATACGCCAGGTGGGCGAGCCATTAAgcg < 1:3219/62‑1 (MQ=255)
aTCGGCCTGATTCAGCTCAATAATCGCCTGAGCAATACGCCAGGTGGGCGAGCCATTAAgcg < 1:38723/62‑1 (MQ=255)
aTCGGCCTGATTCAGCTCAATAATCGCCTGAGCAATACGCCAGGTGGGCGAGCCATTAAgcg < 1:38850/62‑1 (MQ=255)
aTCGGCCTGATTCAGCTCAATAATCGCCTGAGCAATACGCCAGGTGGGCGAGCCATTAAgcg < 1:43081/62‑1 (MQ=255)
tCGGCCTGATTCAGCTCAATAATCGCCTGAGCAATACGCCAGGTGGGCGAGCCATTAAgcg < 1:28027/61‑1 (MQ=255)
tCGGCCTGATTCAGCTCAATAATCGCCTGAGCAATACGCCAGGTGGGCGAGCCATTAAgcg < 1:66668/61‑1 (MQ=255)
tCGGCCTGATTCAGCTCAATAATCGCCTGAGCAATACGCCAGGTGGGCGAGCCATTAAgcg < 1:52173/61‑1 (MQ=255)
tCGGCCTGATTCAGCTCAATAATCGCCTGAGCAATACGCCAGGTGGGCGAGCCATTAAgcg < 1:22107/61‑1 (MQ=255)
tCGGCCTGATTCAGCTCAATAATCGCCTGAGCAATACGCCAGGTGGGCGAGCCATTAAgcg < 1:46560/61‑1 (MQ=255)
cAATAATCGCCTGAGCAATACGCCAGGTGGGCGAGCCATTAAgcg < 1:30606/45‑1 (MQ=38)
|
ATCGGCCTGATTCAGCTCAATAATTGCCTGAGCAATACGCCAGGTGGGCGATCCATTAAGCG > W3110S.gb/2815965‑2816026
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
