Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I1 R1
|
826 |
0.0 |
88706 |
74.7% |
66263 |
57.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
2,980,188 |
T→C |
V217V (GTA→GTG) |
araE ← |
arabinose transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 2,980,188 | 0 | T | C | 100.0%
| 145.9
/ NA
| 78 | V217V (GTA→GTG) | araE | arabinose transporter |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (0/78); total (0/78) |
CGACGTATCGCGCAGCATACGCAATACTTCTTCCGCCTCAATATGACGCCCCTTTTCCGCC > W3110S.gb/2980164‑2980224
|
cGACGTTTCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:2092/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:69315/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:76468/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:76264/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:7615/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:75796/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:75599/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:74544/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:71690/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:70071/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:6985/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:76671/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:68102/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:66726/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:66255/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:65859/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:63519/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:60719/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:59817/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:59233/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:82508/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:9828/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:9592/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:9501/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:9041/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:8973/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:87717/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:86329/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:85255/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:1241/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:82461/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:82248/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:82025/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:81411/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:80730/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:78217/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:78189/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:77376/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:2563/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:31391/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:30895/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:30371/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:30272/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:30213/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:29952/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:2840/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:266/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:26081/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:31641/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:23695/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:22868/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:21845/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:21457/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:20704/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:20699/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:17838/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:17347/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:10416/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:57163/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:53742/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:53213/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:51888/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:55021/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:50699/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:50441/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:55464/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:48848/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:47207/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:43921/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:43144/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:42653/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:40232/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:37837/61‑1 (MQ=255)
cGACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:3698/61‑1 (MQ=255)
gACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:58296/60‑1 (MQ=255)
gACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:50841/60‑1 (MQ=255)
gACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:69239/60‑1 (MQ=255)
gACGTATCGCGCAGCATACGCAACACTTCTTCCGCCTCAATATGACGCCCCTTTTCCgcc < 1:69538/60‑1 (MQ=255)
|
CGACGTATCGCGCAGCATACGCAATACTTCTTCCGCCTCAATATGACGCCCCTTTTCCGCC > W3110S.gb/2980164‑2980224
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
