Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I1 R1
|
826 |
0.0 |
88706 |
74.7% |
66263 |
57.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
3,004,431 |
A→C |
A4A (GCT→GCG) |
ygeV ← |
predicted DNA‑binding transcriptional regulator |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 3,004,431 | 0 | A | C | 100.0%
| 167.2
/ NA
| 89 | A4A (GCT→GCG) | ygeV | predicted DNA‑binding transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base C (0/89); total (0/89) |
AAAACGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTAGCAAGCTCCATAG > W3110S.gb/3004383‑3004444
|
aaaaCGCTGAATTGTCTGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:81606/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCAtgg < 1:48887/62‑3 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:60816/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:67842/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:67671/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:6714/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:66037/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:65410/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:64834/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:6442/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:6272/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:62353/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:6217/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:71456/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:60747/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:60043/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:56537/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:56356/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:54084/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:51147/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:10057/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:50039/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:80931/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:9423/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:9280/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:87759/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:87349/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:85458/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:84268/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:82774/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:81715/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:81624/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:81170/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:70385/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:80731/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:79959/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:79690/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:79591/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:79223/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:79172/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:76584/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:75630/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:50960/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:2845/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:34832/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:34331/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:33964/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:33942/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:32825/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:31547/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:29872/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:29826/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:29170/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:46136/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:28402/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:2614/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:22544/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:21934/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:19677/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:18665/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:18505/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:18334/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:10862/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:42725/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:48953/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:45795/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:45164/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:44985/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:44912/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:43884/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:43558/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:43156/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:43041/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:37480/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:41198/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:40694/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:40512/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:40157/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:39042/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:38153/62‑1 (MQ=255)
aaaaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCACAAGCTCCATAg < 1:70447/62‑1 (MQ=255)
aaaaCGCTGAATCGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:80570/62‑1 (MQ=255)
aaCGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:68233/60‑1 (MQ=255)
caaTTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:34075/53‑1 (MQ=255)
ggTTGAATTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:2668/46‑1 (MQ=255)
aTTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:55906/40‑1 (MQ=255)
aTTTGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:36172/40‑1 (MQ=255)
ttGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:56262/38‑1 (MQ=255)
tGCATCAATACTGACTGCGTAGTCGCAAGCTCCATAg < 1:41481/37‑1 (MQ=255)
|
AAAACGCTGAATTGTCGGTTGAATTTGCATCAATACTGACTGCGTAGTAGCAAGCTCCATAG > W3110S.gb/3004383‑3004444
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
