Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I1 R1
|
826 |
0.0 |
88706 |
74.7% |
66263 |
57.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
3,027,428 |
T→C |
T81A (ACC→GCA) |
ygfS ← |
predicted oxidoreductase, 4Fe‑4S ferredoxin‑type subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 3,027,428 | 0 | T | C | 100.0%
| 145.7
/ NA
| 78 | T81A (ACC→GCA) | ygfS | predicted oxidoreductase, 4Fe‑4S ferredoxin‑type subunit |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (0/78); total (0/78) |
ACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGGCAAGCGC > W3110S.gb/3027414‑3027475
|
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:60215/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:6736/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:67190/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:65265/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:64316/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:63826/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:62587/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:6251/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:62146/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:60725/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:68264/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:57146/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:56807/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:56545/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:55938/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:55847/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:55486/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:53157/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:53056/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:51519/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:77233/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:9920/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:87650/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:85105/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:82849/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:81872/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:81075/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:80974/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:79837/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:78947/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:51368/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:75735/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:75680/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:73981/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:73524/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:72961/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:69985/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:69802/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:68968/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:209/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:10949/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:27528/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:26682/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:26253/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:25399/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:24881/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:23720/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:2246/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:21699/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:28107/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:18806/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:17952/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:15332/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:14454/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:14055/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:13433/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:11820/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:11153/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:4199/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:50318/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:4996/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:49944/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:48959/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:47999/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:4684/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:45643/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:28445/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:41863/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:40849/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:38211/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:35590/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:33672/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:32552/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:31531/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:30753/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:29546/62‑1 (MQ=255)
aCGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGGCAGCGCCCCCACGGGACAAgcgc < 1:17723/62‑1 (MQ=255)
cGGGCAGAATTTGCCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGACAAgcgc < 1:14597/61‑1 (MQ=255)
|
ACGGGCAGAATTGGTCTGCACCACCTGCTCGCCCATCGTCAGCGCCCCCACGGGGCAAGCGC > W3110S.gb/3027414‑3027475
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
