Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I1 R1
|
826 |
0.0 |
88706 |
74.7% |
66263 |
57.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
3,108,403 |
T→C |
L65L (CTT→CTC) |
yqgA → |
predicted inner membrane protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 3,108,403 | 0 | T | C | 100.0%
| 54.0
/ NA
| 32 | L65L (CTT→CTC) | yqgA | predicted inner membrane protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (0/32); total (0/32) |
TTTAGCTACGCTACTTGGCGCTCTAATTGGCGAAATTTGTTTGCTGGAGAAAGGTGTCAATA > W3110S.gb/3108388‑3108449
|
tttAGCAACCTTACTCGGAGCATTAATCGGCGAAATTTGTCTGCTGGAAAAAGGCGTCAATa < 1:52669/62‑1 (MQ=255)
tttAGCAACCTTACTCGGAGCATTAATCGGCGAAATTTGTCTGCTGGAAAAAGGCGTCAATa < 1:87381/62‑1 (MQ=255)
tttAGCAACCTTACTCGGAGCATTAATCGGCGAAATTTGTCTGCTGGAAAAAGGCGTCAATa < 1:85101/62‑1 (MQ=255)
tttAGCAACCTTACTCGGAGCATTAATCGGCGAAATTTGTCTGCTGGAAAAAGGCGTCAATa < 1:81314/62‑1 (MQ=255)
tttAGCAACCTTACTCGGAGCATTAATCGGCGAAATTTGTCTGCTGGAAAAAGGCGTCAATa < 1:78499/62‑1 (MQ=255)
tttAGCAACCTTACTCGGAGCATTAATCGGCGAAATTTGTCTGCTGGAAAAAGGCGTCAATa < 1:78396/62‑1 (MQ=255)
tttAGCAACCTTACTCGGAGCATTAATCGGCGAAATTTGTCTGCTGGAAAAAGGCGTCAATa < 1:74023/62‑1 (MQ=255)
tttAGCAACCTTACTCGGAGCATTAATCGGCGAAATTTGTCTGCTGGAAAAAGGCGTCAATa < 1:72451/62‑1 (MQ=255)
tttAGCAACCTTACTCGGAGCATTAATCGGCGAAATTTGTCTGCTGGAAAAAGGCGTCAATa < 1:70830/62‑1 (MQ=255)
tttAGCAACCTTACTCGGAGCATTAATCGGCGAAATTTGTCTGCTGGAAAAAGGCGTCAATa < 1:70719/62‑1 (MQ=255)
tttAGCAACCTTACTCGGAGCATTAATCGGCGAAATTTGTCTGCTGGAAAAAGGCGTCAATa < 1:69650/62‑1 (MQ=255)
tttAGCAACCTTACTCGGAGCATTAATCGGCGAAATTTGTCTGCTGGAAAAAGGCGTCAATa < 1:58495/62‑1 (MQ=255)
tttAGCAACCTTACTCGGAGCATTAATCGGCGAAATTTGTCTGCTGGAAAAAGGCGTCAATa < 1:57210/62‑1 (MQ=255)
tttAGCAACCTTACTCGGAGCATTAATCGGCGAAATTTGTCTGCTGGAAAAAGGCGTCAATa < 1:56087/62‑1 (MQ=255)
tttAGCAACCTTACTCGGAGCATTAATCGGCGAAATTTGTCTGCTGGAAAAAGGCGTCAATa < 1:53546/62‑1 (MQ=255)
tttAGCAACCTTACTCGGAGCATTAATCGGCGAAATTTGTCTGCTGGAAAAAGGCGTCAATa < 1:53253/62‑1 (MQ=255)
tttAGCAACCTTACTCGGAGCATTAATCGGCGAAATTTGTCTGCTGGAAAAAGGCGTCAATa < 1:12352/62‑1 (MQ=255)
tttAGCAACCTTACTCGGAGCATTAATCGGCGAAATTTGTCTGCTGGAAAAAGGCGTCAATa < 1:50496/62‑1 (MQ=255)
tttAGCAACCTTACTCGGAGCATTAATCGGCGAAATTTGTCTGCTGGAAAAAGGCGTCAATa < 1:4955/62‑1 (MQ=255)
tttAGCAACCTTACTCGGAGCATTAATCGGCGAAATTTGTCTGCTGGAAAAAGGCGTCAATa < 1:47388/62‑1 (MQ=255)
tttAGCAACCTTACTCGGAGCATTAATCGGCGAAATTTGTCTGCTGGAAAAAGGCGTCAATa < 1:46125/62‑1 (MQ=255)
tttAGCAACCTTACTCGGAGCATTAATCGGCGAAATTTGTCTGCTGGAAAAAGGCGTCAATa < 1:43796/62‑1 (MQ=255)
tttAGCAACCTTACTCGGAGCATTAATCGGCGAAATTTGTCTGCTGGAAAAAGGCGTCAATa < 1:42892/62‑1 (MQ=255)
tttAGCAACCTTACTCGGAGCATTAATCGGCGAAATTTGTCTGCTGGAAAAAGGCGTCAATa < 1:40295/62‑1 (MQ=255)
tttAGCAACCTTACTCGGAGCATTAATCGGCGAAATTTGTCTGCTGGAAAAAGGCGTCAATa < 1:34887/62‑1 (MQ=255)
tttAGCAACCTTACTCGGAGCATTAATCGGCGAAATTTGTCTGCTGGAAAAAGGCGTCAATa < 1:3182/62‑1 (MQ=255)
tttAGCAACCTTACTCGGAGCATTAATCGGCGAAATTTGTCTGCTGGAAAAAGGCGTCAATa < 1:30664/62‑1 (MQ=255)
tttAGCAACCTTACTCGGAGCATTAATCGGCGAAATTTGTCTGCTGGAAAAAGGCGTCAATa < 1:29626/62‑1 (MQ=255)
tttAGCAACCTTACTCGGAGCATTAATCGGCGAAATTTGTCTGCTGGAAAAAGGCGTCAATa < 1:28554/62‑1 (MQ=255)
tttAGCAACCTTACTCGGAGCATTAATCGGCGAAATTTGTCTGCTGGAAAAAGGCGTCAATa < 1:20953/62‑1 (MQ=255)
tttAGCAACCTTACTCGGAGCATTAATCGGCGAAATTTGTCTGCTGGAAAAAGGCGTCAATa < 1:19309/62‑1 (MQ=255)
tttAGCAACCTTACTCGGAGCATTAATCGGCGAAATTTGTCTGCTGGAAAAAGGCGTCAATa < 1:13711/62‑1 (MQ=255)
|
TTTAGCTACGCTACTTGGCGCTCTAATTGGCGAAATTTGTTTGCTGGAGAAAGGTGTCAATA > W3110S.gb/3108388‑3108449
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
