Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I1 R1
|
826 |
0.0 |
88706 |
74.7% |
66263 |
57.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
3,432,696 |
A→G |
D222D (GAT→GAC) |
zraR ← |
fused DNA‑binding response regulator in two‑component regulatory system with ZraS |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 3,432,696 | 0 | A | G | 100.0%
| 98.0
/ NA
| 54 | D222D (GAT→GAC) | zraR | fused DNA‑binding response regulator in two‑component regulatory system with ZraS |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (54/0); total (54/0) |
GGCGTTTATCGGCTCCAGTAAACGCCCCTTTTTCGTGACCGAACAATTCAGATTCCAGCAAG > W3110S.gb/3432689‑3432750
|
ggCGTTTGTCGGCCCCGGTATACGCCCCTTTTTCGTg > 1:79644/1‑37 (MQ=25)
ggCGTTTGTCGGCCCCGGTAAACGCCCCTTTTTCGt > 1:61730/1‑36 (MQ=18)
ggCGTTTGTCGGCCCCGGTAAACGCCCCTTTTTCGTGGCCGAACAATTCAGACTCCAGCAAg > 1:85397/1‑62 (MQ=25)
ggCGTTTGTCGGCCCCGGTAAACGCCCCTTTTTCGTGCCCGCACAATTCAGCCTCCAGCa > 1:2572/1‑60 (MQ=25)
ggCGTTTGTCGGCCCCGGTAAACGCCCCTTTTTCGTGCCCGAACAATTCAGACTCCAGCAAg > 1:30620/1‑62 (MQ=25)
ggCGTTTGTCGGCCCCGGTAAACGCCCCTTTTTCGTGACCGAACAATTCa > 1:14949/1‑50 (MQ=25)
ggCGTTTGTCGGCCCCGGTAAACGCCCCTTTTTCGTGACCGAACAATTCAGACTCCAGCaa > 1:48882/1‑61 (MQ=25)
ggCGTTTGTCGGCCCCGGTAAACGCCCCTTTTTCGTGACCGAACAATTCAGACTCCAGCaa > 1:76015/1‑61 (MQ=25)
ggCGTTTGTCGGCCCCGGTAAACGCCCCTTTTTCGTGACCGAACAATTCAGACTCCAGCa > 1:65731/1‑60 (MQ=25)
ggCGTTTGTCGGCCCCGGTAAACGCCCCTTTTTCGTGACCGAACAATTCAGACTCCAGCAAg > 1:6137/1‑62 (MQ=25)
ggCGTTTGTCGGCCCCGGTAAACGCCCCTTTTTCGTGACCGAACAATTCAGACTCCAGCAAg > 1:67001/1‑62 (MQ=25)
ggCGTTTGTCGGCCCCGGTAAACGCCCCTTTTTCGTGACCGAACAATTCAGACTCCAGCAAg > 1:64604/1‑62 (MQ=25)
ggCGTTTGTCGGCCCCGGTAAACGCCCCTTTTTCGTGACCGAACAATTCAGACTCCAGCAAg > 1:62911/1‑62 (MQ=25)
ggCGTTTGTCGGCCCCGGTAAACGCCCCTTTTTCGTGACCGAACAATTCAGACTCCAGCAAg > 1:75840/1‑62 (MQ=25)
ggCGTTTGTCGGCCCCGGTAAACGCCCCTTTTTCGTGACCGAACAATTCAGACTCCAGCAAg > 1:6101/1‑62 (MQ=25)
ggCGTTTGTCGGCCCCGGTAAACGCCCCTTTTTCGTGACCGAACAATTCAGACTCCAGCAAg > 1:59997/1‑62 (MQ=25)
ggCGTTTGTCGGCCCCGGTAAACGCCCCTTTTTCGTGACCGAACAATTCAGACTCCAGCAAg > 1:59770/1‑62 (MQ=25)
ggCGTTTGTCGGCCCCGGTAAACGCCCCTTTTTCGTGACCGAACAATTCAGACTCCAGCAAg > 1:5889/1‑62 (MQ=25)
ggCGTTTGTCGGCCCCGGTAAACGCCCCTTTTTCGTGACCGAACAATTCAGACTCCAGCAAg > 1:67047/1‑62 (MQ=25)
ggCGTTTGTCGGCCCCGGTAAACGCCCCTTTTTCGTGACCGAACAATTCAGACTCCAGCAAg > 1:74192/1‑62 (MQ=25)
ggCGTTTGTCGGCCCCGGTAAACGCCCCTTTTTCGTGACCGAACAATTCAGACTCCAGCAAg > 1:75046/1‑62 (MQ=25)
ggCGTTTGTCGGCCCCGGTAAACGCCCCTTTTTCGTGACCGAACAATTCAGACTCCAGCAAg > 1:50590/1‑62 (MQ=25)
ggCGTTTGTCGGCCCCGGTAAACGCCCCTTTTTCGTGACCGAACAATTCAGACTCCAGCAAg > 1:75929/1‑62 (MQ=25)
ggCGTTTGTCGGCCCCGGTAAACGCCCCTTTTTCGTGACCGAACAATTCAGACTCCAGCAAg > 1:76233/1‑62 (MQ=25)
ggCGTTTGTCGGCCCCGGTAAACGCCCCTTTTTCGTGACCGAACAATTCAGACTCCAGCAAg > 1:76990/1‑62 (MQ=25)
ggCGTTTGTCGGCCCCGGTAAACGCCCCTTTTTCGTGACCGAACAATTCAGACTCCAGCAAg > 1:78866/1‑62 (MQ=25)
ggCGTTTGTCGGCCCCGGTAAACGCCCCTTTTTCGTGACCGAACAATTCAGACTCCAGCAAg > 1:81026/1‑62 (MQ=25)
ggCGTTTGTCGGCCCCGGTAAACGCCCCTTTTTCGTGACCGAACAATTCAGACTCCAGCAAg > 1:81678/1‑62 (MQ=25)
ggCGTTTGTCGGCCCCGGTAAACGCCCCTTTTTCGTGACCGAACAATTCAGACTCCAGCAAg > 1:86847/1‑62 (MQ=25)
ggCGTTTGTCGGCCCCGGTAAACGCCCCTTTTTCGTGACCGAACAATTCAGACTCCAGCAAg > 1:32789/1‑62 (MQ=25)
ggCGTTTGTCGGCCCCGGTAAACGCCCCTTTTTCGTGACCGAACAATTCAGACTCCAGCAAg > 1:12329/1‑62 (MQ=25)
ggCGTTTGTCGGCCCCGGTAAACGCCCCTTTTTCGTGACCGAACAATTCAGACTCCAGCAAg > 1:1682/1‑62 (MQ=25)
ggCGTTTGTCGGCCCCGGTAAACGCCCCTTTTTCGTGACCGAACAATTCAGACTCCAGCAAg > 1:17342/1‑62 (MQ=25)
ggCGTTTGTCGGCCCCGGTAAACGCCCCTTTTTCGTGACCGAACAATTCAGACTCCAGCAAg > 1:21821/1‑62 (MQ=25)
ggCGTTTGTCGGCCCCGGTAAACGCCCCTTTTTCGTGACCGAACAATTCAGACTCCAGCAAg > 1:22142/1‑62 (MQ=25)
ggCGTTTGTCGGCCCCGGTAAACGCCCCTTTTTCGTGACCGAACAATTCAGACTCCAGCAAg > 1:23599/1‑62 (MQ=25)
ggCGTTTGTCGGCCCCGGTAAACGCCCCTTTTTCGTGACCGAACAATTCAGACTCCAGCAAg > 1:24139/1‑62 (MQ=25)
ggCGTTTGTCGGCCCCGGTAAACGCCCCTTTTTCGTGACCGAACAATTCAGACTCCAGCAAg > 1:25105/1‑62 (MQ=25)
ggCGTTTGTCGGCCCCGGTAAACGCCCCTTTTTCGTGACCGAACAATTCAGACTCCAGCAAg > 1:26604/1‑62 (MQ=25)
ggCGTTTGTCGGCCCCGGTAAACGCCCCTTTTTCGTGACCGAACAATTCAGACTCCAGCAAg > 1:29976/1‑62 (MQ=25)
ggCGTTTGTCGGCCCCGGTAAACGCCCCTTTTTCGTGACCGAACAATTCAGACTCCAGCAAg > 1:3245/1‑62 (MQ=25)
ggCGTTTGTCGGCCCCGGTAAACGCCCCTTTTTCGTGACCGAACAATTCAGACTCCAGCAAg > 1:32462/1‑62 (MQ=25)
ggCGTTTGTCGGCCCCGGTAAACGCCCCTTTTTCGTGACCGAACAATTCAGACTCCAGCAAg > 1:53172/1‑62 (MQ=25)
ggCGTTTGTCGGCCCCGGTAAACGCCCCTTTTTCGTGACCGAACAATTCAGACTCCAGCAAg > 1:37510/1‑62 (MQ=25)
ggCGTTTGTCGGCCCCGGTAAACGCCCCTTTTTCGTGACCGAACAATTCAGACTCCAGCAAg > 1:37955/1‑62 (MQ=25)
ggCGTTTGTCGGCCCCGGTAAACGCCCCTTTTTCGTGACCGAACAATTCAGACTCCAGCAAg > 1:43276/1‑62 (MQ=25)
ggCGTTTGTCGGCCCCGGTAAACGCCCCTTTTTCGTGACCGAACAATTCAGACTCCAGCAAg > 1:43617/1‑62 (MQ=25)
ggCGTTTGTCGGCCCCGGTAAACGCCCCTTTTTCGTGACCGAACAATTCAGACTCCAGCAAg > 1:44757/1‑62 (MQ=25)
ggCGTTTGTCGGCCCCGGTAAACGCCCCTTTTTCGTGACCGAACAATTCAGACTCCAGCAAg > 1:45091/1‑62 (MQ=25)
ggCGTTTGTCGGCCCCGGTAAACGCCCCTTTTTCGTGACCGAACAATTCAGACTCCAGCAAg > 1:47340/1‑62 (MQ=25)
ggCGTTTGTCGGCCCCGGTAAACGCCCCTTTTTCGTGACCGAACAATTCAGACTCCAGCAAg > 1:4973/1‑62 (MQ=25)
ggCGTTTGTCGGCCCCGGTAAACGCCCCTTTTTCGTGACCGAACAATTCAGACTCCAGCAAg > 1:50468/1‑62 (MQ=25)
ggCGTTTGTCGGCCCCGGTAAACGCCCCTTTTTCGTGACCGAACAATTCAGACTCCAGCAAg > 1:10660/1‑62 (MQ=25)
ggCGTTTGTCGGCCCCGGTAAACGCCCCTTTTTCGTGACCGAACAATTCAGACTCCAGCAAg > 1:50622/1‑62 (MQ=25)
|
GGCGTTTATCGGCTCCAGTAAACGCCCCTTTTTCGTGACCGAACAATTCAGATTCCAGCAAG > W3110S.gb/3432689‑3432750
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
