Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I1 R1
|
826 |
0.0 |
88706 |
74.7% |
66263 |
57.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
3,486,345 |
A→G |
intergenic (+111/‑71) |
ppc → / → yijP |
phosphoenolpyruvate carboxylase/conserved inner membrane protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 3,486,345 | 0 | A | G | 100.0%
| 55.8
/ NA
| 31 | intergenic (+111/‑71) | ppc/yijP | phosphoenolpyruvate carboxylase/conserved inner membrane protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (0/31); total (0/31) |
ATTCAAATTCTGAATATACCTTCAGATATCCTTAAGGAATTGTCGTTACATTCGGCGATAT > W3110S.gb/3486333‑3486393
|
aTTCAAAATCTGGATATCCCTTCAGATATCCTTAAGGAATTGTCGTTACATTCGGCGatat < 1:57702/61‑1 (MQ=255)
aTTCAAAATCTGGATATCCCTTCAGATATCCTTAAGGAATTGTCGTTACATTCGGCGatat < 1:88616/61‑1 (MQ=255)
aTTCAAAATCTGGATATCCCTTCAGATATCCTTAAGGAATTGTCGTTACATTCGGCGatat < 1:82663/61‑1 (MQ=255)
aTTCAAAATCTGGATATCCCTTCAGATATCCTTAAGGAATTGTCGTTACATTCGGCGatat < 1:82559/61‑1 (MQ=255)
aTTCAAAATCTGGATATCCCTTCAGATATCCTTAAGGAATTGTCGTTACATTCGGCGatat < 1:74821/61‑1 (MQ=255)
aTTCAAAATCTGGATATCCCTTCAGATATCCTTAAGGAATTGTCGTTACATTCGGCGatat < 1:7467/61‑1 (MQ=255)
aTTCAAAATCTGGATATCCCTTCAGATATCCTTAAGGAATTGTCGTTACATTCGGCGatat < 1:73592/61‑1 (MQ=255)
aTTCAAAATCTGGATATCCCTTCAGATATCCTTAAGGAATTGTCGTTACATTCGGCGatat < 1:71713/61‑1 (MQ=255)
aTTCAAAATCTGGATATCCCTTCAGATATCCTTAAGGAATTGTCGTTACATTCGGCGatat < 1:69303/61‑1 (MQ=255)
aTTCAAAATCTGGATATCCCTTCAGATATCCTTAAGGAATTGTCGTTACATTCGGCGatat < 1:68620/61‑1 (MQ=255)
aTTCAAAATCTGGATATCCCTTCAGATATCCTTAAGGAATTGTCGTTACATTCGGCGatat < 1:6715/61‑1 (MQ=255)
aTTCAAAATCTGGATATCCCTTCAGATATCCTTAAGGAATTGTCGTTACATTCGGCGatat < 1:67084/61‑1 (MQ=255)
aTTCAAAATCTGGATATCCCTTCAGATATCCTTAAGGAATTGTCGTTACATTCGGCGatat < 1:64125/61‑1 (MQ=255)
aTTCAAAATCTGGATATCCCTTCAGATATCCTTAAGGAATTGTCGTTACATTCGGCGatat < 1:61972/61‑1 (MQ=255)
aTTCAAAATCTGGATATCCCTTCAGATATCCTTAAGGAATTGTCGTTACATTCGGCGatat < 1:61222/61‑1 (MQ=255)
aTTCAAAATCTGGATATCCCTTCAGATATCCTTAAGGAATTGTCGTTACATTCGGCGatat < 1:602/61‑1 (MQ=255)
aTTCAAAATCTGGATATCCCTTCAGATATCCTTAAGGAATTGTCGTTACATTCGGCGatat < 1:14087/61‑1 (MQ=255)
aTTCAAAATCTGGATATCCCTTCAGATATCCTTAAGGAATTGTCGTTACATTCGGCGatat < 1:46256/61‑1 (MQ=255)
aTTCAAAATCTGGATATCCCTTCAGATATCCTTAAGGAATTGTCGTTACATTCGGCGatat < 1:40886/61‑1 (MQ=255)
aTTCAAAATCTGGATATCCCTTCAGATATCCTTAAGGAATTGTCGTTACATTCGGCGatat < 1:38707/61‑1 (MQ=255)
aTTCAAAATCTGGATATCCCTTCAGATATCCTTAAGGAATTGTCGTTACATTCGGCGatat < 1:3516/61‑1 (MQ=255)
aTTCAAAATCTGGATATCCCTTCAGATATCCTTAAGGAATTGTCGTTACATTCGGCGatat < 1:28950/61‑1 (MQ=255)
aTTCAAAATCTGGATATCCCTTCAGATATCCTTAAGGAATTGTCGTTACATTCGGCGatat < 1:27309/61‑1 (MQ=255)
aTTCAAAATCTGGATATCCCTTCAGATATCCTTAAGGAATTGTCGTTACATTCGGCGatat < 1:25380/61‑1 (MQ=255)
aTTCAAAATCTGGATATCCCTTCAGATATCCTTAAGGAATTGTCGTTACATTCGGCGatat < 1:23784/61‑1 (MQ=255)
aTTCAAAATCTGGATATCCCTTCAGATATCCTTAAGGAATTGTCGTTACATTCGGCGatat < 1:21804/61‑1 (MQ=255)
aTTCAAAATCTGGATATCCCTTCAGATATCCTTAAGGAATTGTCGTTACATTCGGCGatat < 1:17565/61‑1 (MQ=255)
aTTCAAAATCTGGATATCCCTTCAGATATCCTTAAGGAATTGTCGTTACATTCGGCGatat < 1:16673/61‑1 (MQ=255)
ttCAAAATCTGGATATCCCTTCAGATATCCTTAAGGAATTGTCGTTACATTCGGCGatat < 1:52371/60‑1 (MQ=255)
ttCAAAATCTGGATATCCCTTCAGATATCCTTAAGGAATTGTCGTTACATTCGGCGatat < 1:14992/60‑1 (MQ=255)
tCAAAATCTGGATATCCCTTCAGATATCCTTAAGGAATTGTCGTTACATTCGGCGatat < 1:41860/59‑1 (MQ=255)
|
ATTCAAATTCTGAATATACCTTCAGATATCCTTAAGGAATTGTCGTTACATTCGGCGATAT > W3110S.gb/3486333‑3486393
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
