Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I1 R1
|
826 |
0.0 |
88706 |
74.7% |
66263 |
57.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
4,037,478 |
T→C |
H435H (CAT→CAC) |
ftsY → |
fused Signal Recognition Particle (SRP) receptor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 4,037,478 | 0 | T | C | 100.0%
| 119.9
/ NA
| 65 | H435H (CAT→CAC) | ftsY | fused Signal Recognition Particle (SRP) receptor |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (0/65); total (0/65) |
GGCAGAACGCGGTAAGCCAGGCCAAACTGTTCCATGAAGCCGTTGGCTTAACCGGCATCACG > W3110S.gb/4037444‑4037505
|
ggCAGAATTCGGTAAGCCAGGCCAAACTGTTCCACGAAGCCGTTGGCTTAACCGGCATCACg < 1:25474/62‑1 (MQ=255)
ggCAGAATGCGGTAAGCCAGGCCAAACTGTTCCACGAAGCCGTTGGCTTAACCGGCATCACg < 1:52006/62‑1 (MQ=255)
ggCAGAATGCGGTAAGCCAGGCCAAACTGTTCCACGAAGCCGTTGGCTTAACCGGCATCACg < 1:59939/62‑1 (MQ=255)
ggCAGAATGCGGTAAGCCAGGCCAAACTGTTCCACGAAGCCGTTGGCTTAACCGGCATCACg < 1:58653/62‑1 (MQ=255)
ggCAGAATGCGGTAAGCCAGGCCAAACTGTTCCACGAAGCCGTTGGCTTAACCGGCATCACg < 1:56279/62‑1 (MQ=255)
ggCAGAATGCGGTAAGCCAGGCCAAACTGTTCCACGAAGCCGTTGGCTTAACCGGCATCACg < 1:53037/62‑1 (MQ=255)
ggCAGAATGCGGTAAGCCAGGCCAAACTGTTCCACGAAGCCGTTGGCTTAACCGGCATCACg < 1:52622/62‑1 (MQ=255)
ggCAGAATGCGGTAAGCCAGGCCAAACTGTTCCACGAAGCCGTTGGCTTAACCGGCATCACg < 1:52486/62‑1 (MQ=255)
ggCAGAATGCGGTAAGCCAGGCCAAACTGTTCCACGAAGCCGTTGGCTTAACCGGCATCACg < 1:52171/62‑1 (MQ=255)
ggCAGAATGCGGTAAGCCAGGCCAAACTGTTCCACGAAGCCGTTGGCTTAACCGGCATCACg < 1:43328/62‑1 (MQ=255)
ggCAGAATGCGGTAAGCCAGGCCAAACTGTTCCACGAAGCCGTTGGCTTAACCGGCATCACg < 1:50656/62‑1 (MQ=255)
ggCAGAATGCGGTAAGCCAGGCCAAACTGTTCCACGAAGCCGTTGGCTTAACCGGCATCACg < 1:50521/62‑1 (MQ=255)
ggCAGAATGCGGTAAGCCAGGCCAAACTGTTCCACGAAGCCGTTGGCTTAACCGGCATCACg < 1:49631/62‑1 (MQ=255)
ggCAGAATGCGGTAAGCCAGGCCAAACTGTTCCACGAAGCCGTTGGCTTAACCGGCATCACg < 1:49102/62‑1 (MQ=255)
ggCAGAATGCGGTAAGCCAGGCCAAACTGTTCCACGAAGCCGTTGGCTTAACCGGCATCACg < 1:46270/62‑1 (MQ=255)
ggCAGAATGCGGTAAGCCAGGCCAAACTGTTCCACGAAGCCGTTGGCTTAACCGGCATCACg < 1:45515/62‑1 (MQ=255)
ggCAGAATGCGGTAAGCCAGGCCAAACTGTTCCACGAAGCCGTTGGCTTAACCGGCATCACg < 1:4210/62‑1 (MQ=255)
ggCAGAATGCGGTAAGCCAGGCCAAACTGTTCCACGAAGCCGTTGGCTTAACCGGCATCACg < 1:62168/62‑1 (MQ=255)
ggCAGAATGCGGTAAGCCAGGCCAAACTGTTCCACGAAGCCGTTGGCTTAACCGGCATCACg < 1:66177/62‑1 (MQ=255)
ggCAGAATGCGGTAAGCCAGGCCAAACTGTTCCACGAAGCCGTTGGCTTAACCGGCATCACg < 1:67964/62‑1 (MQ=255)
ggCAGAATGCGGTAAGCCAGGCCAAACTGTTCCACGAAGCCGTTGGCTTAACCGGCATCACg < 1:70789/62‑1 (MQ=255)
ggCAGAATGCGGTAAGCCAGGCCAAACTGTTCCACGAAGCCGTTGGCTTAACCGGCATCACg < 1:72662/62‑1 (MQ=255)
ggCAGAATGCGGTAAGCCAGGCCAAACTGTTCCACGAAGCCGTTGGCTTAACCGGCATCACg < 1:73406/62‑1 (MQ=255)
ggCAGAATGCGGTAAGCCAGGCCAAACTGTTCCACGAAGCCGTTGGCTTAACCGGCATCACg < 1:73710/62‑1 (MQ=255)
ggCAGAATGCGGTAAGCCAGGCCAAACTGTTCCACGAAGCCGTTGGCTTAACCGGCATCACg < 1:76125/62‑1 (MQ=255)
ggCAGAATGCGGTAAGCCAGGCCAAACTGTTCCACGAAGCCGTTGGCTTAACCGGCATCACg < 1:78646/62‑1 (MQ=255)
ggCAGAATGCGGTAAGCCAGGCCAAACTGTTCCACGAAGCCGTTGGCTTAACCGGCATCACg < 1:78854/62‑1 (MQ=255)
ggCAGAATGCGGTAAGCCAGGCCAAACTGTTCCACGAAGCCGTTGGCTTAACCGGCATCACg < 1:79228/62‑1 (MQ=255)
ggCAGAATGCGGTAAGCCAGGCCAAACTGTTCCACGAAGCCGTTGGCTTAACCGGCATCACg < 1:79606/62‑1 (MQ=255)
ggCAGAATGCGGTAAGCCAGGCCAAACTGTTCCACGAAGCCGTTGGCTTAACCGGCATCACg < 1:87789/62‑1 (MQ=255)
ggCAGAATGCGGTAAGCCAGGCCAAACTGTTCCACGAAGCCGTTGGCTTAACCGGCATCACg < 1:8780/62‑1 (MQ=255)
ggCAGAATGCGGTAAGCCAGGCCAAACTGTTCCACGAAGCCGTTGGCTTAACCGGCATCACg < 1:8877/62‑1 (MQ=255)
ggCAGAATGCGGTAAGCCAGGCCAAACTGTTCCACGAAGCCGTTGGCTTAACCGGCATCACg < 1:9537/62‑1 (MQ=255)
ggCAGAATGCGGTAAGCCAGGCCAAACTGTTCCACGAAGCCGTTGGCTTAACCGGCATCACg < 1:25310/62‑1 (MQ=255)
ggCAGAATGCGGTAAGCCAGGCCAAACTGTTCCACGAAGCCGTTGGCTTAACCGGCATCACg < 1:10756/62‑1 (MQ=255)
ggCAGAATGCGGTAAGCCAGGCCAAACTGTTCCACGAAGCCGTTGGCTTAACCGGCATCACg < 1:11233/62‑1 (MQ=255)
ggCAGAATGCGGTAAGCCAGGCCAAACTGTTCCACGAAGCCGTTGGCTTAACCGGCATCACg < 1:11356/62‑1 (MQ=255)
ggCAGAATGCGGTAAGCCAGGCCAAACTGTTCCACGAAGCCGTTGGCTTAACCGGCATCACg < 1:1197/62‑1 (MQ=255)
ggCAGAATGCGGTAAGCCAGGCCAAACTGTTCCACGAAGCCGTTGGCTTAACCGGCATCACg < 1:1291/62‑1 (MQ=255)
ggCAGAATGCGGTAAGCCAGGCCAAACTGTTCCACGAAGCCGTTGGCTTAACCGGCATCACg < 1:15314/62‑1 (MQ=255)
ggCAGAATGCGGTAAGCCAGGCCAAACTGTTCCACGAAGCCGTTGGCTTAACCGGCATCACg < 1:18918/62‑1 (MQ=255)
ggCAGAATGCGGTAAGCCAGGCCAAACTGTTCCACGAAGCCGTTGGCTTAACCGGCATCACg < 1:19169/62‑1 (MQ=255)
ggCAGAATGCGGTAAGCCAGGCCAAACTGTTCCACGAAGCCGTTGGCTTAACCGGCATCACg < 1:19644/62‑1 (MQ=255)
ggCAGAATGCGGTAAGCCAGGCCAAACTGTTCCACGAAGCCGTTGGCTTAACCGGCATCACg < 1:20032/62‑1 (MQ=255)
ggCAGAATGCGGTAAGCCAGGCCAAACTGTTCCACGAAGCCGTTGGCTTAACCGGCATCACg < 1:21924/62‑1 (MQ=255)
ggCAGAATGCGGTAAGCCAGGCCAAACTGTTCCACGAAGCCGTTGGCTTAACCGGCATCACg < 1:23549/62‑1 (MQ=255)
ggCAGAATGCGGTAAGCCAGGCCAAACTGTTCCACGAAGCCGTTGGCTTAACCGGCATCACg < 1:23561/62‑1 (MQ=255)
ggCAGAATGCGGTAAGCCAGGCCAAACTGTTCCACGAAGCCGTTGGCTTAACCGGCATCACg < 1:24294/62‑1 (MQ=255)
ggCAGAATGCGGTAAGCCAGGCCAAACTGTTCCACGAAGCCGTTGGCTTAACCGGCATCACg < 1:1004/62‑1 (MQ=255)
ggCAGAATGCGGTAAGCCAGGCCAAACTGTTCCACGAAGCCGTTGGCTTAACCGGCATCACg < 1:26465/62‑1 (MQ=255)
ggCAGAATGCGGTAAGCCAGGCCAAACTGTTCCACGAAGCCGTTGGCTTAACCGGCATCACg < 1:29396/62‑1 (MQ=255)
ggCAGAATGCGGTAAGCCAGGCCAAACTGTTCCACGAAGCCGTTGGCTTAACCGGCATCACg < 1:29503/62‑1 (MQ=255)
ggCAGAATGCGGTAAGCCAGGCCAAACTGTTCCACGAAGCCGTTGGCTTAACCGGCATCACg < 1:31155/62‑1 (MQ=255)
ggCAGAATGCGGTAAGCCAGGCCAAACTGTTCCACGAAGCCGTTGGCTTAACCGGCATCACg < 1:32079/62‑1 (MQ=255)
ggCAGAATGCGGTAAGCCAGGCCAAACTGTTCCACGAAGCCGTTGGCTTAACCGGCATCACg < 1:32521/62‑1 (MQ=255)
ggCAGAATGCGGTAAGCCAGGCCAAACTGTTCCACGAAGCCGTTGGCTTAACCGGCATCACg < 1:3310/62‑1 (MQ=255)
ggCAGAATGCGGTAAGCCAGGCCAAACTGTTCCACGAAGCCGTTGGCTTAACCGGCATCACg < 1:33478/62‑1 (MQ=255)
ggCAGAATGCGGTAAGCCAGGCCAAACTGTTCCACGAAGCCGTTGGCTTAACCGGCATCACg < 1:33765/62‑1 (MQ=255)
ggCAGAATGCGGTAAGCCAGGCCAAACTGTTCCACGAAGCCGTTGGCTTAACCGGCATCACg < 1:34326/62‑1 (MQ=255)
ggCAGAATGCGGTAAGCCAGGCCAAACTGTTCCACGAAGCCGTTGGCTTAACCGGCATCACg < 1:34910/62‑1 (MQ=255)
ggCAGAATGCGGTAAGCCAGGCCAAACTGTTCCACGAAGCCGTTGGCTTAACCGGCATCACg < 1:38604/62‑1 (MQ=255)
ggCAGAATGCGGTAAGCCAGGCCAAACTGTTCCACGAAGCCGTTGGCTTAACCGGCATCACg < 1:3870/62‑1 (MQ=255)
ggCAGAATGCGGTAAGCCAGGCCAAACTGTTCCACGAAGCCGTTGGCTTAACCGGCATCACg < 1:41117/62‑1 (MQ=255)
ggCAGAATGCGGTAAGCCAGGCCAAACTGTTCCACGAAGCCGTTGGCTTAACCGGCATCACg < 1:41736/62‑1 (MQ=255)
aGGCCAAACTGTTCCACGAAGCCGTTGGCTTAACCGGCATCACg < 1:74076/44‑1 (MQ=255)
|
GGCAGAACGCGGTAAGCCAGGCCAAACTGTTCCATGAAGCCGTTGGCTTAACCGGCATCACG > W3110S.gb/4037444‑4037505
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
