Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I1 R1
|
826 |
0.0 |
88706 |
74.7% |
66263 |
57.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
4,463,003 |
A→G |
A121A (GCA→GCG) |
pmbA → |
predicted peptidase required for the maturation and secretion of the antibiotic peptide MccB17 |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 4,463,003 | 0 | A | G | 100.0%
| 98.4
/ NA
| 57 | A121A (GCA→GCG) | pmbA | predicted peptidase required for the maturation and secretion of the antibiotic peptide MccB17 |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (57/0); total (57/0) |
CCAGATCCCTGTGCCGGCGTGGCAGACAAAGAGCTGCTGGCCTTTGACGCACCAGATCTCGA > W3110S.gb/4462953‑4463014
|
ccAGATGCGTATGCAGGCGTGGCAGACAAAGAACTGCTGGCTTTTGACGCGCCGGATCTTGa > 1:6764/1‑62 (MQ=16)
ccAGATCCGTATGCAGGCGTTGCAGACAAAGAACTGCTGGCTTTTGACGCGCCGGATCTTGa > 1:65501/1‑62 (MQ=16)
ccAGATCCGTATGCAGGCGTGGCAGACAAAGAACTGCTGGCTTTTGACGCGCCGGAtcttgg > 1:43368/1‑59 (MQ=19)
ccAGATCCGTATGCAGGCGTGGCAGACAAAGAACTGCTGGCTTTTGACGCGCCGGATCTTGa > 1:66107/1‑62 (MQ=19)
ccAGATCCGTATGCAGGCGTGGCAGACAAAGAACTGCTGGCTTTTGACGCGCCGGATCTTGa > 1:5727/1‑62 (MQ=19)
ccAGATCCGTATGCAGGCGTGGCAGACAAAGAACTGCTGGCTTTTGACGCGCCGGATCTTGa > 1:57346/1‑62 (MQ=19)
ccAGATCCGTATGCAGGCGTGGCAGACAAAGAACTGCTGGCTTTTGACGCGCCGGATCTTGa > 1:58604/1‑62 (MQ=19)
ccAGATCCGTATGCAGGCGTGGCAGACAAAGAACTGCTGGCTTTTGACGCGCCGGATCTTGa > 1:59646/1‑62 (MQ=19)
ccAGATCCGTATGCAGGCGTGGCAGACAAAGAACTGCTGGCTTTTGACGCGCCGGATCTTGa > 1:60139/1‑62 (MQ=19)
ccAGATCCGTATGCAGGCGTGGCAGACAAAGAACTGCTGGCTTTTGACGCGCCGGATCTTGa > 1:60247/1‑62 (MQ=19)
ccAGATCCGTATGCAGGCGTGGCAGACAAAGAACTGCTGGCTTTTGACGCGCCGGATCTTGa > 1:60312/1‑62 (MQ=19)
ccAGATCCGTATGCAGGCGTGGCAGACAAAGAACTGCTGGCTTTTGACGCGCCGGATCTTGa > 1:60931/1‑62 (MQ=19)
ccAGATCCGTATGCAGGCGTGGCAGACAAAGAACTGCTGGCTTTTGACGCGCCGGATCTTGa > 1:61378/1‑62 (MQ=19)
ccAGATCCGTATGCAGGCGTGGCAGACAAAGAACTGCTGGCTTTTGACGCGCCGGATCTTGa > 1:61586/1‑62 (MQ=19)
ccAGATCCGTATGCAGGCGTGGCAGACAAAGAACTGCTGGCTTTTGACGCGCCGGATCTTGa > 1:61793/1‑62 (MQ=19)
ccAGATCCGTATGCAGGCGTGGCAGACAAAGAACTGCTGGCTTTTGACGCGCCGGATCTTGa > 1:64537/1‑62 (MQ=19)
ccAGATCCGTATGCAGGCGTGGCAGACAAAGAACTGCTGGCTTTTGACGCGCCGGATCTTGa > 1:54220/1‑62 (MQ=19)
ccAGATCCGTATGCAGGCGTGGCAGACAAAGAACTGCTGGCTTTTGACGCGCCGGATCTTGa > 1:68292/1‑62 (MQ=19)
ccAGATCCGTATGCAGGCGTGGCAGACAAAGAACTGCTGGCTTTTGACGCGCCGGATCTTGa > 1:71232/1‑62 (MQ=19)
ccAGATCCGTATGCAGGCGTGGCAGACAAAGAACTGCTGGCTTTTGACGCGCCGGATCTTGa > 1:71587/1‑62 (MQ=19)
ccAGATCCGTATGCAGGCGTGGCAGACAAAGAACTGCTGGCTTTTGACGCGCCGGATCTTGa > 1:74554/1‑62 (MQ=19)
ccAGATCCGTATGCAGGCGTGGCAGACAAAGAACTGCTGGCTTTTGACGCGCCGGATCTTGa > 1:76912/1‑62 (MQ=19)
ccAGATCCGTATGCAGGCGTGGCAGACAAAGAACTGCTGGCTTTTGACGCGCCGGATCTTGa > 1:78157/1‑62 (MQ=19)
ccAGATCCGTATGCAGGCGTGGCAGACAAAGAACTGCTGGCTTTTGACGCGCCGGATCTTGa > 1:79072/1‑62 (MQ=19)
ccAGATCCGTATGCAGGCGTGGCAGACAAAGAACTGCTGGCTTTTGACGCGCCGGATCTTGa > 1:81406/1‑62 (MQ=19)
ccAGATCCGTATGCAGGCGTGGCAGACAAAGAACTGCTGGCTTTTGACGCGCCGGATCTTGa > 1:82231/1‑62 (MQ=19)
ccAGATCCGTATGCAGGCGTGGCAGACAAAGAACTGCTGGCTTTTGACGCGCCGGATCTTGa > 1:82572/1‑62 (MQ=19)
ccAGATCCGTATGCAGGCGTGGCAGACAAAGAACTGCTGGCTTTTGACGCGCCGGATCTTGa > 1:85420/1‑62 (MQ=19)
ccAGATCCGTATGCAGGCGTGGCAGACAAAGAACTGCTGGCTTTTGACGCGCCGGATCTTGa > 1:88516/1‑62 (MQ=19)
ccAGATCCGTATGCAGGCGTGGCAGACAAAGAACTGCTGGCTTTTGACGCGCCGGATCTTGa > 1:30333/1‑62 (MQ=19)
ccAGATCCGTATGCAGGCGTGGCAGACAAAGAACTGCTGGCTTTTGACGCGCCGGATCTTGa > 1:12746/1‑62 (MQ=19)
ccAGATCCGTATGCAGGCGTGGCAGACAAAGAACTGCTGGCTTTTGACGCGCCGGATCTTGa > 1:15492/1‑62 (MQ=19)
ccAGATCCGTATGCAGGCGTGGCAGACAAAGAACTGCTGGCTTTTGACGCGCCGGATCTTGa > 1:15618/1‑62 (MQ=19)
ccAGATCCGTATGCAGGCGTGGCAGACAAAGAACTGCTGGCTTTTGACGCGCCGGATCTTGa > 1:18589/1‑62 (MQ=19)
ccAGATCCGTATGCAGGCGTGGCAGACAAAGAACTGCTGGCTTTTGACGCGCCGGATCTTGa > 1:19214/1‑62 (MQ=19)
ccAGATCCGTATGCAGGCGTGGCAGACAAAGAACTGCTGGCTTTTGACGCGCCGGATCTTGa > 1:20109/1‑62 (MQ=19)
ccAGATCCGTATGCAGGCGTGGCAGACAAAGAACTGCTGGCTTTTGACGCGCCGGATCTTGa > 1:21812/1‑62 (MQ=19)
ccAGATCCGTATGCAGGCGTGGCAGACAAAGAACTGCTGGCTTTTGACGCGCCGGATCTTGa > 1:2300/1‑62 (MQ=19)
ccAGATCCGTATGCAGGCGTGGCAGACAAAGAACTGCTGGCTTTTGACGCGCCGGATCTTGa > 1:24063/1‑62 (MQ=19)
ccAGATCCGTATGCAGGCGTGGCAGACAAAGAACTGCTGGCTTTTGACGCGCCGGATCTTGa > 1:2411/1‑62 (MQ=19)
ccAGATCCGTATGCAGGCGTGGCAGACAAAGAACTGCTGGCTTTTGACGCGCCGGATCTTGa > 1:25932/1‑62 (MQ=19)
ccAGATCCGTATGCAGGCGTGGCAGACAAAGAACTGCTGGCTTTTGACGCGCCGGATCTTGa > 1:29879/1‑62 (MQ=19)
ccAGATCCGTATGCAGGCGTGGCAGACAAAGAACTGCTGGCTTTTGACGCGCCGGATCTTGa > 1:29886/1‑62 (MQ=19)
ccAGATCCGTATGCAGGCGTGGCAGACAAAGAACTGCTGGCTTTTGACGCGCCGGATCTTGa > 1:56390/1‑62 (MQ=19)
ccAGATCCGTATGCAGGCGTGGCAGACAAAGAACTGCTGGCTTTTGACGCGCCGGATCTTGa > 1:32250/1‑62 (MQ=19)
ccAGATCCGTATGCAGGCGTGGCAGACAAAGAACTGCTGGCTTTTGACGCGCCGGATCTTGa > 1:32795/1‑62 (MQ=19)
ccAGATCCGTATGCAGGCGTGGCAGACAAAGAACTGCTGGCTTTTGACGCGCCGGATCTTGa > 1:34221/1‑62 (MQ=19)
ccAGATCCGTATGCAGGCGTGGCAGACAAAGAACTGCTGGCTTTTGACGCGCCGGATCTTGa > 1:36193/1‑62 (MQ=19)
ccAGATCCGTATGCAGGCGTGGCAGACAAAGAACTGCTGGCTTTTGACGCGCCGGATCTTGa > 1:37974/1‑62 (MQ=19)
ccAGATCCGTATGCAGGCGTGGCAGACAAAGAACTGCTGGCTTTTGACGCGCCGGATCTTGa > 1:38881/1‑62 (MQ=19)
ccAGATCCGTATGCAGGCGTGGCAGACAAAGAACTGCTGGCTTTTGACGCGCCGGATCTTGa > 1:38970/1‑62 (MQ=19)
ccAGATCCGTATGCAGGCGTGGCAGACAAAGAACTGCTGGCTTTTGACGCGCCGGATCTTGa > 1:42846/1‑62 (MQ=19)
ccAGATCCGTATGCAGGCGTGGCAGACAAAGAACTGCTGGCTTTTGACGCGCCGGATCTTGa > 1:49815/1‑62 (MQ=19)
ccAGATCCGTATGCAGGCGTGGCAGACAAAGAACTGCTGGCTTTTGACGCGCCGGATCTTGa > 1:52356/1‑62 (MQ=19)
ccAGATCCGTATGCAGGCGTGGCAGACAAAGAACTGCTGGCTTTTGACGCGCCGGATCTTGa > 1:53600/1‑62 (MQ=19)
ccAGATCCGTATGCAGGCGTGGCAGACAAAGAACTGCTGGCTTTTGACGCGCCGGATCTTGa > 1:54218/1‑62 (MQ=19)
ccAGATCAGTATGCAGGCGTGGCAGACAAAGAACTGCTGGCTTTTGACGCGCCGGAtcttg > 1:11883/1‑59 (MQ=16)
|
CCAGATCCCTGTGCCGGCGTGGCAGACAAAGAGCTGCTGGCCTTTGACGCACCAGATCTCGA > W3110S.gb/4462953‑4463014
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
