Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I3 R1
|
375 |
42.1 |
2927644 |
71.4% |
2090337 |
57.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
669,696 |
T→C |
intergenic (‑238/+22) |
ybeB ← / ← cobC |
hypothetical protein/predicted alpha‑ribazole‑5'‑P phosphatase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 669,696 | 0 | T | C | 100.0%
| 17.7
/ NA
| 7 | intergenic (‑238/+22) | ybeB/cobC | hypothetical protein/predicted alpha‑ribazole‑5'‑P phosphatase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (7/0); total (7/0) |
ATGGTCGTTGCGGCTTACCCGTAAAAAAACAGAAAAGTCATGCATTCTCGACCCCGATGGCA > W3110S.gb/669681‑669742
|
aTGGTCGTTGCGGCTCACCCGTAAAAAAACAGAAAAGTCATGCATTCTCGACCCCGa > 1:2520702/1‑57 (MQ=255)
aTGGTCGTTGCGGCTCACCCGTAAAAAAACAGAAAAGTCATGCATTCTCGACCCCGATGGcc > 1:2511890/1‑61 (MQ=255)
aTGGTCGTTGCGGCTCACCCGTAAAAAAACAGAAAAGTCATGCATTCTCGACCCCGATGGCa > 1:1503441/1‑62 (MQ=255)
aTGGTCGTTGCGGCTCACCCGTAAAAAAACAGAAAAGTCATGCATTCTCGACCCCGATGGCa > 1:190640/1‑62 (MQ=255)
aTGGTCGTTGCGGCTCACCCGTAAAAAAACAGAAAAGTCATGCATTCTCGACCCCGATGGCa > 1:2002751/1‑62 (MQ=255)
aTGGTCGTTGCGGCTCACCCGTAAAAAAACAGAAAAGTCATGCATTCTCGACCCCGATGGCa > 1:2698127/1‑62 (MQ=255)
aTGGTCGTTGCGGCTCACCCGTAAAAAAACAGAAAAGTCATGCATTCTCGACCCCGATGGCa > 1:485397/1‑62 (MQ=255)
|
ATGGTCGTTGCGGCTTACCCGTAAAAAAACAGAAAAGTCATGCATTCTCGACCCCGATGGCA > W3110S.gb/669681‑669742
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
