Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I3 R1
|
375 |
42.1 |
2927644 |
71.4% |
2090337 |
57.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
2,118,866 |
T→C |
A133A (GCA→GCG) |
wcaL ← |
predicted glycosyl transferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 2,118,866 | 0 | T | C | 82.0%
| 238.0
/ 51.5
| 134 | A133A (GCA→GCG) | wcaL | predicted glycosyl transferase |
| Reads supporting (aligned to +/- strand): ref base T (24/0); new base C (109/0); total (134/0) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.61e-01 |
Only 100 of 134 total aligned reads displayed.
CGTGGAAGATAGTGGCAATTTTGCCGCGAATGACACCCAGTTCGCGGAGTTTTGCTGCGGTTACCCCCGCGGGACCAAAATGAGCGATGAACACATCGG > W3110S.gb/2118811‑2118909
|
cGTGGAAGATAGTGGCAATTTTGCCGCGAATGACACCCAGTTCGCGGAGTTTTGCTGCGGtt > 1:2837713/1‑62 (MQ=255)
cGTGGAAGATAGTGGCAATTTTGCCGCGAATGACACCCAGTTCGCGGAGTTTTGCTGCGGtt > 1:1731544/1‑62 (MQ=255)
cGTGGAAGATAGTGGCAATTTTGCCGCGAATGACACCCAGTTCGCGGAGTTTTGCTGCGGtt > 1:1778102/1‑62 (MQ=255)
cGTGGAAGATAGTGGCAATTTTGCCGCGAATGACACCCAGTTCGCGGAGTTTTGCTGCGGtt > 1:1001477/1‑62 (MQ=255)
cGTGGAAGATAGTGGCAATTTTGCCGCGAATGACACCCAGTTCGCGGAGTTTTGCTGCGGtt > 1:292803/1‑62 (MQ=255)
cGTGGAAGATAGTGGCAATTTTGCCGCGAATGACACCCAGTTCGCGGAGTTTTGCTGCGGtt > 1:2787750/1‑62 (MQ=255)
cGTGGAAGATAGTGGCAATTTTGCCGCGAATGACACCCAGTTCGCGGAGTTTTGCTGCGGtt > 1:1885314/1‑62 (MQ=255)
cGTGGAAGATAGTGGCAATTTTGCCGCGAATGACACCCAGTTCGCGGAGTTTTGCTGCGGtt > 1:472814/1‑62 (MQ=255)
cGTGGAAGATAGTGGCAATTTTGCCGCGAATGACACCCAGTTCGCGGAGTTTTGCTGCGGtt > 1:593097/1‑62 (MQ=255)
cGTGGAAGATAGTGGCAATTTTGCCGCGAATGACACCCAGTTCGCGGAGTTTTGCTGCGGtt > 1:6546/1‑62 (MQ=255)
cGTGGAAGATAGTGGCAATTTTGCCGCGAATGACACCCAGTTCGCGGAGTTTTGCTGCGGtt > 1:2516284/1‑62 (MQ=255)
cGTGGAAGATAGTGGCAATTTTGCCGCGAATGACACCCAGTTCGCGGAGTTTTGCTGCGGtt > 1:2685953/1‑62 (MQ=255)
tGCCGCGAATGACACCCAGTTCGCGGAGTTTTGCTGCGGTTAc > 1:2705279/1‑43 (MQ=255)
tGCCGCGAATGACACCCAGTTCGCGGAGTTTTGCTGCGGTTACCCCCGCGGGACCaa > 1:1356050/1‑57 (MQ=255)
tGCCGCGAATGACACCCAGTTCGCGGAGTTTTGCTGCGGTTACCCCCGCGGGACCaa > 1:584444/1‑57 (MQ=255)
tGCCGCGAATGACACCCAGTTCGCGGAGTTTTGCTGCGGTTACCCCCGCGGGACCaa > 1:1134908/1‑57 (MQ=255)
tGCCGCGAATGACACCCAGTTCGCGGAGTTTTGCTGCGGTTACCCCCGCGGGACCaa > 1:1169225/1‑57 (MQ=255)
tGCCGCGAATGACACCCAGTTCGCGGAGTTTTGCTGCGGTTACCCCCGCGGGACCaa > 1:1867792/1‑57 (MQ=255)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATc > 1:570492/1‑60 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATc > 1:1198162/1‑60 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:235100/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:2592414/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:240135/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:2826026/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:2825899/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:2437523/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:2773014/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:2443908/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:2746650/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:2735621/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:246144/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:332237/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:2695530/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:647844/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:960693/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:896684/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:846274/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:821415/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:810667/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:763449/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:745915/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:73464/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:662153/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:2870053/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:606726/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:567811/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:537404/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:472324/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:437472/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:347880/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:2285239/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:313342/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:2899332/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:1431464/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:1686544/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:16854/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:2329511/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:1576110/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:1520184/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:1510919/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:1480127/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:1454827/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:1442594/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:1603597/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:1410290/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:1387984/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:1382174/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:1378105/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:1304149/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:1232397/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:1163649/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:1087286/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:1032882/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:1703445/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:209795/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:2095441/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:2078726/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:2024888/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:1949112/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:1900797/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:1870749/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:2117471/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:1810976/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:2146894/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:2210735/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:2237114/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:1777929/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:2292840/1‑62 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCg > 1:2140482/1‑61 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCg > 1:1192276/1‑61 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCg > 1:1766630/1‑61 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCg > 1:1585935/1‑61 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCg > 1:383976/1‑61 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCg > 1:366120/1‑61 (MQ=25)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACAAATCgg > 1:1539990/1‑62 (MQ=21)
cAGTTCGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCAAAAATGAGCGATAAACACATCgg > 1:1553949/1‑62 (MQ=255)
cAGTTCGCGTAGTTTTGCCGCGGTTACACCAGCAGGGCCAAAATGAGCGAt > 1:1645185/1‑51 (MQ=255)
cAGTTCGCGTAGTTTTGCCGCGGTTACACCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:2371527/1‑62 (MQ=21)
cAGTTCGCGTAGTTTTGCAGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:2438659/1‑62 (MQ=25)
cAGTTAGCGTAGTTTTGCCGCGGTTACCCCAGCAGGGCCAAAATGAGCGATAAACACATCgg > 1:1601514/1‑62 (MQ=21)
|
CGTGGAAGATAGTGGCAATTTTGCCGCGAATGACACCCAGTTCGCGGAGTTTTGCTGCGGTTACCCCCGCGGGACCAAAATGAGCGATGAACACATCGG > W3110S.gb/2118811‑2118909
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
