Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I3 R1
|
375 |
42.1 |
2927644 |
71.4% |
2090337 |
57.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
3,945,840 |
T→G |
S220S (TCT→TCG) |
bcsA → |
cellulose synthase, catalytic subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 3,945,840 | 0 | T | G | 100.0%
| 35.8
/ NA
| 12 | S220S (TCT→TCG) | bcsA | cellulose synthase, catalytic subunit |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base G (12/0); total (12/0) |
GTCGCTGACCGTTTCTTGCCGTTATATCTGGTGGCGTTACACCTCTACGCTGAACTGGGACGATCCGGTCAGCCTGGTGTGCGGGCTTATTCTGCTCTTCGCTGAAA > W3110S.gb/3945795‑3945901
|
gTCGCTGACCGTTTCTTGCCGTTATATCTGGTGGCGTTACACCTCGACGTTAAACTGGGACg > 1:1335554/1‑62 (MQ=255)
gTCGCTGACCGTTTCTTGCCGTTATATCTGGTGGCGTTACACCTCGACGTTAAACTGGGACg > 1:630157/1‑62 (MQ=255)
gTCGCTGACCGTTTCTTGCCGTTATATCTGGTGGCGTTACACCTCGACGTTAAACTGGGACg > 1:615789/1‑62 (MQ=255)
gTCGCTGACCGTTTCTTGCCGTTATATCTGGTGGCGTTACACCTCGACGTTAAACTGGGACg > 1:301411/1‑62 (MQ=255)
gTCGCTGACCGTTTCTTGCCGTTATATCTGGTGGCGTTACACCTCGACGTTAAACTGGGACg > 1:2913213/1‑62 (MQ=255)
gTCGCTGACCGTTTCTTGCCGTTATATCTGGTGGCGTTACACCTCGACGTTAAACTGGGACg > 1:2734938/1‑62 (MQ=255)
gTCGCTGACCGTTTCTTGCCGTTATATCTGGTGGCGTTACACCTCGACGTTAAACTGGGACg > 1:2605739/1‑62 (MQ=255)
gTCGCTGACCGTTTCTTGCCGTTATATCTGGTGGCGTTACACCTCGACGTTAAACTGGGACg > 1:2131327/1‑62 (MQ=255)
gTCGCTGACCGTTTCTTGCCGTTATATCTGGTGGCGTTACACCTCGACGTTAAACTGGGACg > 1:2033631/1‑62 (MQ=255)
gTCGCTGACCGTTTCTTGCCGTTATATCTGGTGGCGTTACACCTCGACGTTAAACTGGGACg > 1:193981/1‑62 (MQ=255)
gTCGCTGACCGTTTCTTGCCGTTATATCTGGTGGCGTTACACCTCGACGTTAAACTGGGACg > 1:1696499/1‑62 (MQ=255)
gTCGCTGACCGTTTCTTGCCGTTATATCTGGTGGCGTTACACCTCGACGTTAAACTGGGACg > 1:1614434/1‑62 (MQ=255)
tACGCTGAACTGGGACGATCCGGTCAGCCTGGTGTGCGGGCtt > 1:923818/1‑43 (MQ=255)
tACGCTGAACTGGGACGATCCGGTCAGCCTGGTGTGCGGGCTTATTCTGCTCTTCGCTGaaa > 1:2761552/1‑62 (MQ=255)
tACGCTGAACTGGGACGATCCGGTCAGCCTGGTGTGCGGGCTTATTCTGCTCTTCGCTGaaa > 1:943484/1‑62 (MQ=255)
tACGCTGAACTGGGACGATCCGGTCAGCCTGGTGTGCGGGCTTATTCTGCTCTTCGCTGaaa > 1:852316/1‑62 (MQ=255)
tACGCTGAACTGGGACGATCCGGTCAGCCTGGTGTGCGGGCTTATTCTGCTCTTCGCTGaaa > 1:727866/1‑62 (MQ=255)
tACGCTGAACTGGGACGATCCGGTCAGCCTGGTGTGCGGGCTTATTCTGCTCTTCGCTGaaa > 1:632774/1‑62 (MQ=255)
tACGCTGAACTGGGACGATCCGGTCAGCCTGGTGTGCGGGCTTATTCTGCTCTTCGCTGaaa > 1:110155/1‑62 (MQ=255)
tACGCTGAACTGGGACGATCCGGTCAGCCTGGTGTGCGGGCTTATTCTGCTCTTCGCTGaaa > 1:625506/1‑62 (MQ=255)
tACGCTGAACTGGGACGATCCGGTCAGCCTGGTGTGCGGGCTTATTCTGCTCTTCGCTGaaa > 1:1389352/1‑62 (MQ=255)
tACGCTGAACTGGGACGATCCGGTCAGCCTGGTGTGCGGGCTTATTCTGCTCTTCGCTGaaa > 1:504799/1‑62 (MQ=255)
tACGCTGAACTGGGACGATCCGGTCAGCCTGGTGTGCGGGCTTATTCTGCTCTTCGCTGaaa > 1:1417604/1‑62 (MQ=255)
tACGCTGAACTGGGACGATCCGGTCAGCCTGGTGTGCGGGCTTATTCTGCTCTTCGCTGaaa > 1:2908785/1‑62 (MQ=255)
tACGCTGAACTGGGACGATCCGGTCAGCCTGGTGTGCGGGCTTATTCTGCTCTTCGCTGaaa > 1:2827838/1‑62 (MQ=255)
tACGCTGAACTGGGACGATCCGGTCAGCCTGGTGTGCGGGCTTATTCTGCTCTTCGCTGaaa > 1:1736389/1‑62 (MQ=255)
tACGCTGAACTGGGACGATCCGGTCAGCCTGGTGTGCGGGCTTATTCTGCTCTTCGCTGaaa > 1:1439673/1‑62 (MQ=255)
tACGCTGAACTGGGACGATCCGGTCAGCCTGGTGTGCGGGCTTATTCTGCTCTTCGCTGaaa > 1:1604778/1‑62 (MQ=255)
tACGCTGAACTGGGACGATCCGGTCAGCCTGGTGTGCGGGCTTATTCTGCTCTTCGCTGaaa > 1:2295553/1‑62 (MQ=255)
tACGCTGAACTGGGACGATCCGGTCAGCCTGGTGTGCGGGCTTATTCTGCTCTTCGCTGaaa > 1:2238807/1‑62 (MQ=255)
tACGCTGAACTGGGACGATCCGGTCAGCCTGGTGTGCGGGCTTATTCTGCTCTTCGCTGaaa > 1:2042582/1‑62 (MQ=255)
tACGCTGAACTGGGACGATCCGGTCAGCCTGGTGTGCGGGCTTATTCTGCTCTTCGCTGaaa > 1:162803/1‑62 (MQ=255)
tACGCTGAACTGGGACGATCCGGTCAGCCTGGTGTGCGGGCTTATTCTGCTCTTCGCTGaaa > 1:2024425/1‑62 (MQ=255)
tACGCTGAACTGGGACGATCCGGTCAGCCTGGTGTGCGGGCTTATTCTGCTCTTCGCTGaaa > 1:1936809/1‑62 (MQ=255)
tACGCTGAACTGGGACGATCCGGTCAGCCTGGTGTGCGGGCTTATTCTGCTCTTCGCTGaaa > 1:1789308/1‑62 (MQ=255)
tACGCTGAACTGGGACGATCCGGTCAGCCTGGTGTGCGGGCTTATTCTGCTCTTCGCTGaaa > 1:1788914/1‑62 (MQ=255)
tACGCTGAACTGGGACGATCCGGTCAGCCTGGTGTGAGGGCTTATTCTGCTCTTCGCTGaaa > 1:1403197/1‑62 (MQ=255)
|
GTCGCTGACCGTTTCTTGCCGTTATATCTGGTGGCGTTACACCTCTACGCTGAACTGGGACGATCCGGTCAGCCTGGTGTGCGGGCTTATTCTGCTCTTCGCTGAAA > W3110S.gb/3945795‑3945901
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
