Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I3 R1
|
375 |
42.1 |
2927644 |
71.4% |
2090337 |
57.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
4,429,248 |
C→T |
E76K (GAA→AAA) |
yjfY ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 4,429,248 | 0 | C | T | 100.0%
| 170.0
/ NA
| 51 | E76K (GAA→AAA) | yjfY | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (36/15); total (36/15) |
GATAAATATCCGCGCTGGCGTGCATATTGCCGTTACTCCCCGGTTCCCGCATCAGAATTACGTGGTAGTACGTTGCGCCTTGCGCATCTGTTTCTTCATTTAA > W3110S.gb/4429203‑4429305
|
gATAAATATCCGCGCTGGCGTTCATATTGCCGTTACTCCCCGGTTTCCGCATCAGAATTAc < 1:1056112/61‑1 (MQ=255)
gATAAATATCCGCGCTGGCGTGCATATTGCCGTTACTCCCCGGTTTCCGCATCAGAATTAc < 1:1088176/61‑1 (MQ=255)
gATAAATATCCGCGCTGGCGTGCATATTGCCGTTACTCCCCGGTTTCCGCATCAGAATTAc < 1:2268347/61‑1 (MQ=255)
gATAAATATCCGCGCTGGCGTGCATATTGCCGTTACTCCCCGGTTTCCGCATCAGAATTAc < 1:2205085/61‑1 (MQ=255)
gATAAATATCCGCGCTGGCGTGCATATTGCCGTTACTCCCCGGTTTCCGCATCAGAATTAc < 1:2176369/61‑1 (MQ=255)
gATAAATATCCGCGCTGGCGTGCATATTGCCGTTACTCCCCGGTTTCCGCATCAGAATTAc < 1:2088939/61‑1 (MQ=255)
gATAAATATCCGCGCTGGCGTGCATATTGCCGTTACTCCCCGGTTTCCGCATCAGAATTAc < 1:2037997/61‑1 (MQ=255)
gATAAATATCCGCGCTGGCGTGCATATTGCCGTTACTCCCCGGTTTCCGCATCAGAATTAc < 1:2444690/61‑1 (MQ=255)
gATAAATATCCGCGCTGGCGTGCATATTGCCGTTACTCCCCGGTTTCCGCATCAGAATTAc < 1:2536172/61‑1 (MQ=255)
gATAAATATCCGCGCTGGCGTGCATATTGCCGTTACTCCCCGGTTTCCGCATCAGAATTAc < 1:1930045/61‑1 (MQ=255)
gATAAATATCCGCGCTGGCGTGCATATTGCCGTTACTCCCCGGTTTCCGCATCAGAATTAc < 1:2868062/61‑1 (MQ=255)
gATAAATATCCGCGCTGGCGTGCATATTGCCGTTACTCCCCGGTTTCCGCATCAGAATTAc < 1:294740/61‑1 (MQ=255)
gATAAATATCCGCGCTGGCGTGCATATTGCCGTTACTCCCCGGTTTCCGCATCAGAATTAc < 1:477715/61‑1 (MQ=255)
gATAAATATCCGCGCTGGCGTGCATATTGCCGTTACTCCCCGGTTTCCGCATCAGAATTAc < 1:821879/61‑1 (MQ=255)
gATAAATATCCGCGCTGGCGTGCATATTGCCGTTACTCCCCGGTTTCCGCATCAGAATTAc < 1:1314980/61‑1 (MQ=255)
aTAAATATCCGCGCTGGCGTGCATATTGCCGTTACTCCCCGGTTTCCGCATCAGAATTa > 1:2727215/1‑59 (MQ=255)
aTAAATATCCGCGCTGGCGTGCATATTGCCGTTACTCCCCGGTTTCCGCATCAGAATTa > 1:2618737/1‑59 (MQ=255)
aTAAATATCCGCGCTGGCGTGCATATTGCCGTTACTCCCCGGTTTCCGCATCAGAATTa > 1:492963/1‑59 (MQ=255)
aTAAATATCCGCGCTGGCGTGCATATTGCCGTTACTCCCCGGTTTCCGCATCAGAATTa > 1:94427/1‑59 (MQ=255)
aTAAATATCCGCGCTGGCGTGCATATTGCCGTTACTCCCCGGTTTCCGCATCAGAATTa > 1:23854/1‑59 (MQ=255)
aTAAATATCCGCGCTGGCGTGCATATTGCCGTTACTCCCCGGTTTCCGCATCAGAATTa > 1:2305947/1‑59 (MQ=255)
aTAAATATCCGCGCTGGCGTGCATATTGCCGTTACTCCCCGGTTTCCGCATCAGAATTa > 1:986100/1‑59 (MQ=255)
aTAAATATCCGCGCTGGCGTGCATATTGCCGTTACTCCCCGGTTTCCGCATCAGAATTa > 1:1398728/1‑59 (MQ=255)
aTAAATATCCGCGCTGGCGTGCATATTGCCGTTACTCCCCGGTTTCCGCATCAGAATTa > 1:1812036/1‑59 (MQ=255)
ccGTTACTCCCCGGTTTCCGCATCAGAATTACGTGGTAGTACGTTGCGCCTTGCGCATCTg > 1:657528/1‑61 (MQ=255)
ccGTTACTCCCCGGTTTCCGCATCAGAATTACGTGGTAGTACGTTGCGCCTTGCGCATCTg > 1:150554/1‑61 (MQ=255)
ccGTTACTCCCCGGTTTCCGCATCAGAATTACGTGGTAGTACGTTGCGCCTTGCGCATCTGt > 1:1209312/1‑62 (MQ=255)
ccGTTACTCCCCGGTTTCCGCATCAGAATTACGTGGTAGTACGTTGCGCCTTGCGCATCTGt > 1:1354455/1‑62 (MQ=255)
ccGTTACTCCCCGGTTTCCGCATCAGAATTACGTGGTAGTACGTTGCGCCTTGCGCATCTGt > 1:2454172/1‑62 (MQ=255)
ggTTTCCGCATCAGAATTACGTGGTAGTACGTTGCGCCTTGCGCATCTGTTTCTTCATTTaa > 1:2813748/1‑62 (MQ=255)
ggTTTCCGCATCAGAATTACGTGGTAGTACGTTGCGCCTTGCGCATCTGTTTCTTCATTTaa > 1:842056/1‑62 (MQ=255)
ggTTTCCGCATCAGAATTACGTGGTAGTACGTTGCGCCTTGCGCATCTGTTTCTTCATTTaa > 1:628494/1‑62 (MQ=255)
ggTTTCCGCATCAGAATTACGTGGTAGTACGTTGCGCCTTGCGCATCTGTTTCTTCATTTaa > 1:527021/1‑62 (MQ=255)
ggTTTCCGCATCAGAATTACGTGGTAGTACGTTGCGCCTTGCGCATCTGTTTCTTCATTTaa > 1:508619/1‑62 (MQ=255)
ggTTTCCGCATCAGAATTACGTGGTAGTACGTTGCGCCTTGCGCATCTGTTTCTTCATTTaa > 1:1477776/1‑62 (MQ=255)
ggTTTCCGCATCAGAATTACGTGGTAGTACGTTGCGCCTTGCGCATCTGTTTCTTCATTTaa > 1:330916/1‑62 (MQ=255)
ggTTTCCGCATCAGAATTACGTGGTAGTACGTTGCGCCTTGCGCATCTGTTTCTTCATTTaa > 1:1734818/1‑62 (MQ=255)
ggTTTCCGCATCAGAATTACGTGGTAGTACGTTGCGCCTTGCGCATCTGTTTCTTCATTTaa > 1:1790536/1‑62 (MQ=255)
ggTTTCCGCATCAGAATTACGTGGTAGTACGTTGCGCCTTGCGCATCTGTTTCTTCATTTaa > 1:2245458/1‑62 (MQ=255)
ggTTTCCGCATCAGAATTACGTGGTAGTACGTTGCGCCTTGCGCATCTGTTTCTTCATTTaa > 1:2662894/1‑62 (MQ=255)
ggTTTCCGCATCAGAATTACGTGGTAGTACGTTGCGCCTTGCGCATCTGTTTCTTCATTTaa > 1:1918489/1‑62 (MQ=255)
ggTTTCCGCATCAGAATTACGTGGTAGTACGTTGCGCCTTGCGCATCTGTTTCTTCATTTaa > 1:2615584/1‑62 (MQ=255)
ggTTTCCGCATCAGAATTACGTGGTAGTACGTTGCGCCTTGCGCATCTGTTTCTTCATTTaa > 1:2609188/1‑62 (MQ=255)
ggTTTCCGCATCAGAATTACGTGGTAGTACGTTGCGCCTTGCGCATCTGTTTCTTCATTTaa > 1:1973983/1‑62 (MQ=255)
ggTTTCCGCATCAGAATTACGTGGTAGTACGTTGCGCCTTGCGCATCTGTTTCTTCATTTaa > 1:202971/1‑62 (MQ=255)
ggTTTCCGCATCAGAATTACGTGGTAGTACGTTGCGCCTTGCGCATCTGTTTCTTCATTTaa > 1:2432043/1‑62 (MQ=255)
ggTTTCCGCATCAGAATTACGTGGTAGTACGTTGCGCCTTGCGCATCTGTTTCTTCATTTaa > 1:2413029/1‑62 (MQ=255)
ggTTTCCGCATCAGAATTACGTGGTAGTACGTTGCGCCTTGCGCATCTGTTTCTTCATTTaa > 1:2393860/1‑62 (MQ=255)
ggTTTCCGCATCAGAATTACGTGGTAGTACGTTGCGCCTTGCGCATCTGTTTCTTCATTTaa > 1:2189824/1‑62 (MQ=255)
ggTTTCCGCATCAGAATTACGTGGTAGTACGTTGCGCCTTGCGCATCTGTTTCTTCATTTa > 1:2784252/1‑61 (MQ=255)
ggTTTCCGCATCAGAATTACGTGGTAGTACGTTGCGCCTTGCGCATCTGTTTCTTAATTTaa > 1:348297/1‑62 (MQ=255)
|
GATAAATATCCGCGCTGGCGTGCATATTGCCGTTACTCCCCGGTTCCCGCATCAGAATTACGTGGTAGTACGTTGCGCCTTGCGCATCTGTTTCTTCATTTAA > W3110S.gb/4429203‑4429305
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
