Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F28 I2 R1
|
52 |
300.6 |
3297834 |
97.8% |
3225281 |
57.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
419,050 |
C→T |
P217S (CCG→TCG) |
ubiF → |
2‑octaprenyl‑3‑methyl‑6‑methoxy‑1,4‑benzoquinol oxygenase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 419,050 | 0 | C | T | 100.0%
| 28.1
/ NA
| 11 | P217S (CCG→TCG) | ubiF | 2‑octaprenyl‑3‑methyl‑6‑methoxy‑1,4‑benzoquinol oxygenase |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (0/11); total (0/11) |
GACCGCGTGCGTTTCTGCCGTTGTTTGATAACTGGGCATCGCTGGTGTGGTATGACTCTCCG > minE/419033‑419094
|
gacCGCGTGCGTTTCTGTCGTTGTTTGATAACTGGTCATCGCTGGTGTTGTATGACTCTCCg < 1:3096714/62‑1 (MQ=255)
gacCGCGTGCGTTTCTGTCGTTGTTTGATAACTGGGCATCGCTGGTGTGGTATGACTCTCCg < 1:1090496/62‑1 (MQ=255)
gacCGCGTGCGTTTCTGTCGTTGTTTGATAACTGGGCATCGCTGGTGTGGTATGACTCTCCg < 1:1092979/62‑1 (MQ=255)
gacCGCGTGCGTTTCTGTCGTTGTTTGATAACTGGGCATCGCTGGTGTGGTATGACTCTCCg < 1:1665375/62‑1 (MQ=255)
gacCGCGTGCGTTTCTGTCGTTGTTTGATAACTGGGCATCGCTGGTGTGGTATGACTCTCCg < 1:1979757/62‑1 (MQ=255)
gacCGCGTGCGTTTCTGTCGTTGTTTGATAACTGGGCATCGCTGGTGTGGTATGACTCTCCg < 1:1990582/62‑1 (MQ=255)
gacCGCGTGCGTTTCTGTCGTTGTTTGATAACTGGGCATCGCTGGTGTGGTATGACTCTCCg < 1:2899553/62‑1 (MQ=255)
gacCGCGTGCGTTTCTGTCGTTGTTTGATAACTGGGCATCGCTGGTGTGGTATGACTCTCCg < 1:3244285/62‑1 (MQ=255)
gacCGCGTGCGTTTCTGTCGTTGTTTGATAACTGGGCATCGCTGGTGTGGTATGACTCTCCg < 1:3291525/62‑1 (MQ=255)
gacCGCGTGCGTTTCTGTCGTTGTTTGATAACTGGGCATCGCTGGTGTGGTATGACTCTCCg < 1:437527/62‑1 (MQ=255)
gacCGCGTGCGTTTCTGTCGTTGTTTGATAACTGGGCATCGCTGGTGTGGTATGACTCTCCg < 1:774267/62‑1 (MQ=255)
|
GACCGCGTGCGTTTCTGCCGTTGTTTGATAACTGGGCATCGCTGGTGTGGTATGACTCTCCG > minE/419033‑419094
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
