Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I2 R2
|
154 |
32.4 |
3140800 |
76.4% |
2399571 |
54.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
W3110S.gb |
3,742,938 |
Δ1,336 bp |
|
insD–insC |
insD, insC |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
W3110S.gb |
3742938–3744265 |
3744273 |
9–1336 |
20 [0] |
[0] 20 |
insD–insC |
insD,insC |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
W3110S.gb |
= 3742937 | 0 (0.000) | 20 (0.830) |
5/92 |
0.2 |
100% |
intergenic (‑123/+9) |
yieE/insD |
predicted phosphopantetheinyl transferase/IS2 element protein |
| ? | W3110S.gb |
3744274 = |
0 (0.000) | intergenic (‑100/+21) |
insC/yidZ |
IS2 element protein/predicted DNA‑binding transcriptional regulator |
GATK/CNVnator alignment
N/A
