Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A5 F28 I2 R2
|
154 |
32.4 |
3140800 |
76.4% |
2399571 |
54.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
4,544,435 |
A→G |
intergenic (‑252/‑1204) |
yjhA ← / → fimB |
N‑acetylnuraminic acid outer membrane channel protein/tyrosine recombinase/inversion of on/off regulator of fimA |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 4,544,435 | 0 | A | G | 100.0%
| 274.7
/ NA
| 76 | intergenic (‑252/‑1204) | yjhA/fimB | N‑acetylnuraminic acid outer membrane channel protein/tyrosine recombinase/inversion of on/off regulator of fimA |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (44/32); total (44/32) |
CTGAGTATAAAATCTCTTCTGATGTTTAATTGATTTGAATGTTCGTAAGCTATATCACTTACTCAATCCATTTTACCCAGAGTCATAAAATAGAATGTCTGTTGATCTC > W3110S.gb/4544384‑4544492
|
cTGAGTATAAAATCTCTTCTGATGTTTAATTGATTTGAATGTTCGTAAGCTGTATCACTTa > 1:1519415/1‑61 (MQ=255)
cTGAGTATAAAATCTCTTCTGATGTTTAATTGATTTGAATGTTCGTAAGCTGTATCACTTa > 1:2307336/1‑61 (MQ=255)
aTCTCTTCTGATGTTTAATTGATTTGAATGTTCGTAAGCTGTATCACTTACTCAATCCAttt < 1:1632860/62‑1 (MQ=255)
aTCTCTTCTGATGTTTAATTGATTTGAATGTTCGTAAGCTGTATCACTTACTCAATCCAttt < 1:711724/62‑1 (MQ=255)
aTCTCTTCTGATGTTTAATTGATTTGAATGTTCGTAAGCTGTATCACTTACTCAATCCAttt < 1:2095235/62‑1 (MQ=255)
aTCTCTTCTGATGTTTAATTGATTTGAATGTTCGTAAGCTGTATCACTTACTCAATCCAttt < 1:139670/62‑1 (MQ=255)
tctcTTCTGATGTTTAATTGATTTGAATGTTCGTAAGCTGTATCACt > 1:255548/1‑47 (MQ=255)
tctcTTCTGATGTTTAATTGATTTGAATGTTCGTAAGCTGTATCACt > 1:1903647/1‑47 (MQ=255)
tctcTTCTGATGTTTAATTGATTTGAATGTTCGTAAGCTGTATCACt > 1:3066074/1‑47 (MQ=255)
tctcTTCTGATGTTTAATTGATTTGAATGTTCGTAAGCTGTATCACt > 1:2404490/1‑47 (MQ=255)
tctcTTCTGATGTTTAATTGATTTGAATGTTCGTAAGCTGTATCACt > 1:2962000/1‑47 (MQ=255)
tctcTTCTGATGTTTAATTGATTTGAATGTTCGTAAGCTGTATCACt > 1:252055/1‑47 (MQ=255)
ctctTCTGATGTTTAATTGATTTGAATGTTCGTAAGCTGTATCACt > 1:1573986/1‑46 (MQ=255)
ctctTCTGATGTTTAATTGATTTGAATGTTCGTAAGCTGTATCACt > 1:347945/1‑46 (MQ=255)
ttctGATGTTTAATTGATTTGAATGTTCGTAAGCTGTATCACt > 1:1773414/1‑43 (MQ=255)
ttctGATGTTTAATTGATTTGAATGTTCGTAAGCTGTATCACTTACTCAATCCATTTTa > 1:757157/1‑59 (MQ=255)
tttAATTGATTTGAATGTTCGTAAGCTGTATCACTTACTCAATCCATTTTACCCAGAGTCAt < 1:3015652/62‑1 (MQ=255)
tttAATTGATTTGAATGTTCGTAAGCTGTATCACTTACTCAATCCATTTTACCCAGAGTCAt < 1:53253/62‑1 (MQ=255)
tttAATTGATTTGAATGTTCGTAAGCTGTATCACTTACTCAATCCATTTTACCCAGAGTCAt < 1:3109879/62‑1 (MQ=255)
tAATTGATTTGAATGTTCGTAAGCTGTATCACTTACTCAATCCATTTTACCCAGAGTCATaa < 1:2411981/62‑1 (MQ=255)
aTTGATTTGAATGTTGGTAAGCTGTATCACTTACTCAATCCATTTTACCCAGAGTCATaa > 1:2773585/1‑60 (MQ=255)
aTTGATTTGAATGTTCGTAAGCTGTATCACTTACTCAATCCATTTTACCCAGAGTCATaa > 1:2597874/1‑60 (MQ=255)
aTTGATTTGAATGTTCGTAAGCTGTATCACTTACTCAATCCATTTTACCCAGAGTCATaa > 1:1665001/1‑60 (MQ=255)
aTTGATTTGAATGTTCGTAAGCTGTATCACTTACTCAATCCATTTTACCCAGAGTCATaa > 1:1657463/1‑60 (MQ=255)
aTTGATTTGAATGTTCGTAAGCTGTATCACTTACTCAATCCATTTTACCCAGAGTCATaa > 1:72734/1‑60 (MQ=255)
aTTGATTTGAATGTTCGTAAGCTGTATCACTTACTCAATCCATTTTACCCAGAGTCATaa > 1:2574763/1‑60 (MQ=255)
aTTGATTTGAATGTTCGTAAGCTGTATCACTTACTCAATCCATTTTACCCAGAGTCATaa > 1:98081/1‑60 (MQ=255)
aTTGATTTGAATGTTCGTAAGCTGTATCACTTACTCAATCCATTTTACCCAGAGTCATaa > 1:630479/1‑60 (MQ=255)
aTTGATTTGAATGTTCGTAAGCTGTATCACTTACTCAATCCATTTTACCCAGAGTCATaa > 1:2475398/1‑60 (MQ=255)
aTTGATTTGAATGTTCGTAAGCTGTATCACTTACTCAATCCATTTTACCCAGAGTCATaa > 1:3025944/1‑60 (MQ=255)
aTTGATTTGAATGTTCGTAAGCTGTATCACTTACTCAATCCATTTTACCCAGAGTCATaa > 1:1454976/1‑60 (MQ=255)
aTTGATTTGAATGTTCGTAAGCTGTATCACTTACTCAATCCATTTTACCCAGAGTCATaa > 1:1345657/1‑60 (MQ=255)
aTTGATTTGAATGTTCGTAAGCTGTATCACTTACTCAATCCATTTTACCCAGAGTCATaa > 1:1112786/1‑60 (MQ=255)
aTTGATTTGAATGTTCGTAAGCTGTATAACTTACTCAATCCATTTTACCCAGAGTCATaa > 1:1472497/1‑60 (MQ=255)
aTTGATTTGAATGTTCGTAAGATGTATCACTTACTCAATCCATTTTACCCAGAGTCATaaa > 1:2036932/1‑61 (MQ=255)
tttGAATGTTCGTAAGCTGTATCACTTACTCAATCCATTTTACCCAGAGTCATAAAATAGaa > 1:1053294/1‑62 (MQ=255)
tttGAATGTTCGTAAGCTGTATCACTTACTCAATCCATTTTACCCAGAGTCATAAAATAGaa > 1:770618/1‑62 (MQ=255)
tttGAATGTTCGTAAGCTGTATCACTTACTCAATCCATTTTACCCAGAGTCATAAAATAGaa > 1:2464383/1‑62 (MQ=255)
tttGAATGTTCGTAAGCTGTATCACTTACTCAATCCATTTTACCCAGAGTCATAAAATAGaa > 1:1050905/1‑62 (MQ=255)
tttGAATGTTCGTAAGCTGTATCACTTACTCAATCCATTTTACCCAGAGTCATAAAATAGaa > 1:916337/1‑62 (MQ=255)
tttGAATGTTCGTAAGCTGTATCACTTACTCAATCCATTTTACCCAGAGTCATAAAATAGaa > 1:2438646/1‑62 (MQ=255)
tttGAATGTTCGTAAGCTGTATCACTTACTCAATCCATTTTACCCAGAGTCATAAAATAGaa > 1:3053190/1‑62 (MQ=255)
tttGAATGTTCGTAAGCTGTATCACTTACTCAATCCATTTTACCCAGAGTCATAAAATAGaa > 1:2186698/1‑62 (MQ=255)
tttGAATGTTCGTAAGCTGTATCACTTACTCAATCCATTTTACCCAGAGTCATAAAATAGaa > 1:2155759/1‑62 (MQ=255)
tttGAATGTTCGTAAGCTGTATCACTTACTCAATCCATTTTACCCAGAGTCATAAAATAGaa > 1:505280/1‑62 (MQ=255)
tttGAATGTTCGTAAGCTGTATCACTTACTCAATCCATTTTACCCAGAGTCATAAAATAGaa > 1:362478/1‑62 (MQ=255)
ttGAATGTTCGTAAGCTGTATCACTTACTCAATCCATTTTACCCAGAGTCATAAAATAGAAt < 1:417508/62‑1 (MQ=255)
ttGAATGTTCGTAAGCTGTATCACTTACTCAATCCATTTTACCCAGAGTCATAAAATAGAAt < 1:576834/62‑1 (MQ=255)
ttGAATGTTCGTAAGCTGTATCACTTACTCAATCCATTTTACCCAGAGTCATAAAATAGAAt < 1:715633/62‑1 (MQ=255)
ttGAATGTTCGTAAGCTGTATCACTTACTCAATCCATTTTACCCAGAGTCATAAAATAGAAt < 1:2379203/62‑1 (MQ=255)
ttGAATGTTCGTAAGCTGTATCACTTACTCAATCCATTTTACCCAGAGTCATAAAATAGAAt < 1:1722526/62‑1 (MQ=255)
tGAATGTTCGTAAGCTGTATCACTTACTCAATCCATTTTACCCAGAGTCATAAAATAGAATg > 1:606635/1‑62 (MQ=255)
tGAATGTTCGTAAGCTGTATCACTTACTCAATCCATTTTACCCAGAGTCATAAAATAGAATg > 1:1087504/1‑62 (MQ=255)
tGAATGTTCGTAAGCTGTATCACTTACTCAATCCATTTTACCCAGAGTCATAAAATAGAATg > 1:1822144/1‑62 (MQ=255)
tGAATGTTCGTAAGCTGTATCACTTACTCAATCCATTTTACCCAGAGTCATAAAATAGAATg > 1:3106206/1‑62 (MQ=255)
tGAATGTTCGTAAGCTGTATCACTTACTCAATCCATTTTACCCAGAGTCATAAAATAGAATg > 1:2101760/1‑62 (MQ=255)
aaTGTTCGTAAGCTGTATCACTTACTCAATCCATTTTACCCAGAGTCATAAAATAGAATGt > 1:1572383/1‑61 (MQ=255)
aagTTCGTAAGCTGTATCACTTACTCAATCCATTTTACCCAGAGTCATAAAATAGAATGTc < 1:302348/59‑1 (MQ=255)
aTGTTCGTAAGCTGTATCACTTACTCAATCCATTTTACCCAGAGTCATAAAATAGAATGTc < 1:2271937/61‑1 (MQ=255)
aTGTTCGTAAGCTGTATCACTTACTCAATCCATTTTACCCAGAGTCATAAAATAGAATGTc < 1:2275267/61‑1 (MQ=255)
aTGTTCGTAAGCTGTATCACTTACTCAATCCATTTTACCCAGAGTCATAAAATAGAATGTc < 1:2650861/61‑1 (MQ=255)
aGCTGTATCACTTACTCAATCCTTTTTACCCAGAGTCATAAAATAGAATGTCTGTTGAtctc < 1:448096/62‑1 (MQ=255)
aGCTGTATCACTTACTCAATCCATTTTACCCAGAGTCATAAAATAGAATGTCTGTTGAtctc < 1:85860/62‑1 (MQ=255)
aGCTGTATCACTTACTCAATCCATTTTACCCAGAGTCATAAAATAGAATGTCTGTTGAtctc < 1:86323/62‑1 (MQ=255)
aGCTGTATCACTTACTCAATCCATTTTACCCAGAGTCATAAAATAGAATGTCTGTTGAtctc < 1:244773/62‑1 (MQ=255)
aGCTGTATCACTTACTCAATCCATTTTACCCAGAGTCATAAAATAGAATGTCTGTTGAtctc < 1:2909649/62‑1 (MQ=255)
aGCTGTATCACTTACTCAATCCATTTTACCCAGAGTCATAAAATAGAATGTCTGTTGAtctc < 1:2521807/62‑1 (MQ=255)
aGCTGTATCACTTACTCAATCCATTTTACCCAGAGTCATAAAATAGAATGTCTGTTGAtctc < 1:2460523/62‑1 (MQ=255)
aGCTGTATCACTTACTCAATCCATTTTACCCAGAGTCATAAAATAGAATGTCTGTTGAtctc < 1:1005224/62‑1 (MQ=255)
aGCTGTATCACTTACTCAATCCATTTTACCCAGAGTCATAAAATAGAATGTCTGTTGAtctc < 1:1983521/62‑1 (MQ=255)
aGCTGTATCACTTACTCAATCCATTTTACCCAGAGTCATAAAATAGAATGTCTGTTGAtctc < 1:1933173/62‑1 (MQ=255)
aGCTGTATCACTTACTCAATCCATTTTACCCAGAGTCATAAAATAGAATGTCTGTTGAtctc < 1:1843540/62‑1 (MQ=255)
aGCTGTATCACTTACTCAATCCATTTTACCCAGAGTCATAAAATAGAATGTCTGTTGAtctc < 1:1739016/62‑1 (MQ=255)
aGCTGTATCACTTACTCAATCCATTTTACCCAGAGTCATAAAATAGAATGTCTGTTGAtctc < 1:1546616/62‑1 (MQ=255)
aGCTGTATCACTTACTCAATCCATTTTACCCAGAGTCATAAAATAGAATGTCTGTTGAtctc < 1:1054681/62‑1 (MQ=255)
aGCTGTATCACTTACTCAATCCATTTTACCCAGAGTCATAAAATAGAATGTCTGTTGAtctc < 1:1039395/62‑1 (MQ=255)
|
CTGAGTATAAAATCTCTTCTGATGTTTAATTGATTTGAATGTTCGTAAGCTATATCACTTACTCAATCCATTTTACCCAGAGTCATAAAATAGAATGTCTGTTGATCTC > W3110S.gb/4544384‑4544492
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
