Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F28 I1 R2
|
90 |
19.5 |
1203533 |
67.3% |
809977 |
57.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
885,890 |
A→G |
intergenic (‑194/+42) |
gmr ← / ← rnb |
modulator of Rnase II stability/ribonuclease II |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 885,890 | 0 | A | G | 100.0%
| 39.2
/ NA
| 12 | intergenic (‑194/+42) | gmr/rnb | modulator of Rnase II stability/ribonuclease II |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (12/0); total (12/0) |
CAGTTAAAAAATCTGCCTGGATATAACGAAGGTAGAGCGGGGAAATAAACGGCCCATCCATG > minE/885848‑885909
|
cAGTTAAATAATCTGCCTGGATATAACGAAGGTAGAGCGGGGGAATAAACGGCCCATCCATg > 1:513766/1‑62 (MQ=255)
cAGTTAAAAAATCTGCCTGGATATAACGAAGGTAGAGCGGGGGAATAAACGGCccatcca > 1:881830/1‑60 (MQ=255)
cAGTTAAAAAATCTGCCTGGATATAACGAAGGTAGAGCGGGGGAATAAACGGCCCATCCATg > 1:1014244/1‑62 (MQ=255)
cAGTTAAAAAATCTGCCTGGATATAACGAAGGTAGAGCGGGGGAATAAACGGCCCATCCATg > 1:1052790/1‑62 (MQ=255)
cAGTTAAAAAATCTGCCTGGATATAACGAAGGTAGAGCGGGGGAATAAACGGCCCATCCATg > 1:1076876/1‑62 (MQ=255)
cAGTTAAAAAATCTGCCTGGATATAACGAAGGTAGAGCGGGGGAATAAACGGCCCATCCATg > 1:287967/1‑62 (MQ=255)
cAGTTAAAAAATCTGCCTGGATATAACGAAGGTAGAGCGGGGGAATAAACGGCCCATCCATg > 1:396588/1‑62 (MQ=255)
cAGTTAAAAAATCTGCCTGGATATAACGAAGGTAGAGCGGGGGAATAAACGGCCCATCCATg > 1:396595/1‑62 (MQ=255)
cAGTTAAAAAATCTGCCTGGATATAACGAAGGTAGAGCGGGGGAATAAACGGCCCATCCATg > 1:435054/1‑62 (MQ=255)
cAGTTAAAAAATCTGCCTGGATATAACGAAGGTAGAGCGGGGGAATAAACGGCCCATCCATg > 1:50057/1‑62 (MQ=255)
cAGTTAAAAAATCTGCCTGGATATAACGAAGGTAGAGCGGGGGAATAAACGGCCCATCCATg > 1:747071/1‑62 (MQ=255)
cAGTTAAAAAATCTGCCTGGATATAACGAAGGTAGAGCGGGGGAATAAACGGCCCATCCATg > 1:795300/1‑62 (MQ=255)
|
CAGTTAAAAAATCTGCCTGGATATAACGAAGGTAGAGCGGGGAAATAAACGGCCCATCCATG > minE/885848‑885909
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
