Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A6 F28 I1 R2
|
90 |
19.5 |
1203533 |
67.3% |
809977 |
57.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
2,974,549 |
T→C |
T315T (ACT→ACC) |
nadR → |
bifunctional DNA‑binding transcriptional repressor and NMN adenylyltransferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 2,974,549 | 0 | T | C | 78.6%
| 393.1
/ 104.4
| 193 | T315T (ACT→ACC) | nadR | bifunctional DNA‑binding transcriptional repressor and NMN adenylyltransferase |
| Reads supporting (aligned to +/- strand): ref base T (0/41); new base C (0/151); total (0/193) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.96e-01 |
Only 100 of 193 total aligned reads displayed.
ATAAAGTGGCATTTATCGATACCGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGAAGGGCGGGAA > minE/2974512‑2974582
|
aTAAAGTGGCATTTATCGATACCGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGaa < 1:327528/62‑1 (MQ=255)
aTAAAGTGGCATTTATCGATACCGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGaa < 1:163264/62‑1 (MQ=255)
aTAAAGTGGCATTTATCGATACCGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGaa < 1:156755/62‑1 (MQ=255)
aTAAAGTGGCATTTATCGATACCGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGaa < 1:134143/62‑1 (MQ=255)
aTAAAGTGGCATTTATCGATACCGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGaa < 1:853781/62‑1 (MQ=255)
aTAAAGTGGCATTTATCGATACCGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGaa < 1:237186/62‑1 (MQ=255)
aTAAAGTGGCATTTATCGATACCGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGaa < 1:266612/62‑1 (MQ=255)
aTAAAGTGGCATTTATCGATACCGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGaa < 1:302104/62‑1 (MQ=255)
aTAAAGTGGCATTTATCGATACCGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGaa < 1:313283/62‑1 (MQ=255)
aTAAAGTGGCATTTATCGATACCGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGaa < 1:118955/62‑1 (MQ=255)
aTAAAGTGGCATTTATCGATACCGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGaa < 1:916845/62‑1 (MQ=255)
aTAAAGTGGCATTTATCGATACCGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGaa < 1:387543/62‑1 (MQ=255)
aTAAAGTGGCATTTATCGATACCGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGaa < 1:941830/62‑1 (MQ=255)
aTAAAGTGGCATTTATCGATACCGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGaa < 1:426798/62‑1 (MQ=255)
aTAAAGTGGCATTTATCGATACCGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGaa < 1:964856/62‑1 (MQ=255)
aTAAAGTGGCATTTATCGATACCGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGaa < 1:571988/62‑1 (MQ=255)
aTAAAGTGGCATTTATCGATACCGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGaa < 1:509148/62‑1 (MQ=255)
aTAAAGTGGCATTTATCGATACCGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGaa < 1:526031/62‑1 (MQ=255)
aTAAAGTGGCATTTATCGATACCGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGaa < 1:1010140/62‑1 (MQ=255)
aTAAAGTGGCATTTATCGATACCGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGaa < 1:536902/62‑1 (MQ=255)
aTAAAGTGGCATTTATCGATACCGATTTTGTCACCACTCAGGCGGTCTGCAAAAAGTACGaa < 1:992776/62‑1 (MQ=255)
tAAAGTGGCATTTATCGATACCGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGaa < 1:198734/61‑1 (MQ=255)
aTCGATACCGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGaa < 1:808519/48‑1 (MQ=255)
gATACCGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGaa < 1:415946/45‑1 (MQ=255)
ttGTCACTCCCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:1030858/44‑2 (MQ=25)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTTCGAAGGGCGTGag < 1:855940/44‑2 (MQ=25)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCgagag < 1:393355/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:610807/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:708993/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:935938/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:657087/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:959127/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:62338/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:615613/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:715486/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:602452/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:575803/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:982750/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:56884/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:987368/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:55795/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:465478/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:871143/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:854445/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:858537/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:848037/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:861130/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:835728/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:864575/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:829363/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:827815/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:713213/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:817910/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:893475/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:802415/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:929160/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:782730/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:773270/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:730480/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:1192552/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:284097/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:248886/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:226908/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:206435/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:190261/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:18048/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:12667/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:1199672/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:1193880/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:1193446/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:292625/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:1188365/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:1163336/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:1157842/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:1138166/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:1120155/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:111058/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:1083408/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:1019926/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:1002930/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:30440/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:533227/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:499159/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:492467/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:485859/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:474855/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:1002783/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:450476/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:446487/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:407679/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:384997/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:381799/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:364142/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:351383/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:350067/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:341032/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:317152/44‑2 (MQ=37)
ttGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:308460/44‑2 (MQ=37)
tGTCACTACCCAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:552306/43‑2 (MQ=37)
tGTCACTAC‑CAGGCGTTCTGCAAAAAGTACGAAGGGCGTGag < 1:696820/42‑2 (MQ=25)
|
ATAAAGTGGCATTTATCGATACCGATTTTGTCACCACTCAGGCGTTCTGCAAAAAGTACGAAGGGCGGGAA > minE/2974512‑2974582
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
