Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F28 I2 R1
|
330 |
0.0 |
2544031 |
91.9% |
2337964 |
62.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
1,695,171 |
T→C |
V269V (GTA→GTG) |
uidB ← |
glucuronide transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 1,695,171 | 0 | T | C | 100.0%
| 62.8
/ NA
| 18 | V269V (GTA→GTG) | uidB | glucuronide transporter |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (0/18); total (0/18) |
CCAACCAGGTTTTGCACCAGTACCAGCACAGTGAACAGCCCGGTATCATTTAACACATAGCGCAC > W3110S.gb/1695151‑1695215
|
ccaaccaGGTTTTGCACCAGCACCAGCACAGTGAACAGCCCGGTATCATTTAACACATAGCGCAc < 1:2362184/65‑1 (MQ=255)
ccaaccaGGTTTTGCACCAGCACCAGCACAGTGAACAGCCCGGTATCATTTAACACATAGCGCAc < 1:969280/65‑1 (MQ=255)
ccaaccaGGTTTTGCACCAGCACCAGCACAGTGAACAGCCCGGTATCATTTAACACATAGCGCAc < 1:929203/65‑1 (MQ=255)
ccaaccaGGTTTTGCACCAGCACCAGCACAGTGAACAGCCCGGTATCATTTAACACATAGCGCAc < 1:64288/65‑1 (MQ=255)
ccaaccaGGTTTTGCACCAGCACCAGCACAGTGAACAGCCCGGTATCATTTAACACATAGCGCAc < 1:542475/65‑1 (MQ=255)
ccaaccaGGTTTTGCACCAGCACCAGCACAGTGAACAGCCCGGTATCATTTAACACATAGCGCAc < 1:494510/65‑1 (MQ=255)
ccaaccaGGTTTTGCACCAGCACCAGCACAGTGAACAGCCCGGTATCATTTAACACATAGCGCAc < 1:370971/65‑1 (MQ=255)
ccaaccaGGTTTTGCACCAGCACCAGCACAGTGAACAGCCCGGTATCATTTAACACATAGCGCAc < 1:2449563/65‑1 (MQ=255)
ccaaccaGGTTTTGCACCAGCACCAGCACAGTGAACAGCCCGGTATCATTTAACACATAGCGCAc < 1:1129665/65‑1 (MQ=255)
ccaaccaGGTTTTGCACCAGCACCAGCACAGTGAACAGCCCGGTATCATTTAACACATAGCGCAc < 1:2306161/65‑1 (MQ=255)
ccaaccaGGTTTTGCACCAGCACCAGCACAGTGAACAGCCCGGTATCATTTAACACATAGCGCAc < 1:2113053/65‑1 (MQ=255)
ccaaccaGGTTTTGCACCAGCACCAGCACAGTGAACAGCCCGGTATCATTTAACACATAGCGCAc < 1:1967744/65‑1 (MQ=255)
ccaaccaGGTTTTGCACCAGCACCAGCACAGTGAACAGCCCGGTATCATTTAACACATAGCGCAc < 1:1928333/65‑1 (MQ=255)
ccaaccaGGTTTTGCACCAGCACCAGCACAGTGAACAGCCCGGTATCATTTAACACATAGCGCAc < 1:1925290/65‑1 (MQ=255)
ccaaccaGGTTTTGCACCAGCACCAGCACAGTGAACAGCCCGGTATCATTTAACACATAGCGCAc < 1:1726590/65‑1 (MQ=255)
ccaaccaGGTTTTGCACCAGCACCAGCACAGTGAACAGCCCGGTATCATTTAACACATAGCGCAc < 1:1542650/65‑1 (MQ=255)
ccaaccaGGTTTTGCACCAGCACCAGCACAGTGAACAGCCCGGTATCATTTAACACATAGCGCAc < 1:1175721/65‑1 (MQ=255)
caaccaGGTTTTGCACCAGCACCAGCACAGTGAACAGCCCGGTATCATTTAACACATAGCGCAc < 1:426001/64‑1 (MQ=255)
|
CCAACCAGGTTTTGCACCAGTACCAGCACAGTGAACAGCCCGGTATCATTTAACACATAGCGCAC > W3110S.gb/1695151‑1695215
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
