Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F28 I3 R1 178 99.0 1887089 95.3% 1798395 63.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA W3110S.gb 3,694,636 C→G noncoding (240/1542 nt) rrsC ← 16S ribosomal RNA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*W3110S.gb3,694,6360CG100.0% 106.1 / NA 191noncoding (240/1542 nt)rrsC16S ribosomal RNA
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base G (0/191);  total (0/191)

Only 100 of 191 total aligned reads displayed.

TTACCCCACCTACTAGCTAATCCCATCTGGGCACATCTGATGGCAAGAGGCCCGAAGGTCCCCCT  >  W3110S.gb/3694613‑3694677
                       |                                         
ttACCCCCCCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:750133/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTCGGCTCATCTGATAGCGTGAGGGCCGAAGATccccca  <  1:1529176/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:350895/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:599573/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:592359/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:560837/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:543663/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:528457/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:517970/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:516562/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:449469/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:43678/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:430951/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:612776/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:344432/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:317710/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:301223/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:300834/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:259515/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:250900/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:239816/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:227815/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:214555/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1012415/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1841816/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:846197/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:992900/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:968884/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:949573/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:939432/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:922783/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:906118/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:886324/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:878283/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:859178/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:850744/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:849567/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1851895/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:81195/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:796859/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:743347/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:719183/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:703331/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:697488/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:648661/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:641088/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:637629/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:628519/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1301693/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1479536/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1830118/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1453006/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1442422/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1432438/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1415013/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1407767/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1406843/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1360231/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1329556/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1319391/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1306046/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1472960/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1283448/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1272866/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1246135/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1228967/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:118727/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1160302/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1136012/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1108840/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1035968/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1027530/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1019893/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1689247/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1812846/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1801086/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1795995/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1782190/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1766939/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1742430/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1725356/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1710702/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1707642/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:170176/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1500515/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1671570/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1654576/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1620637/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1609938/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1585169/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1584143/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1517949/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:1510350/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGGGAGGGCCGAAGATccccca  <  1:1052741/65‑2 (MQ=2)
ttACCCCACCAACTAGCTAATCCGACCTAGGCTCAACTGATAGCGTGAGGTCCGAAGATccccca  <  1:1337510/65‑2 (MQ=2)
 tACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:357083/64‑2 (MQ=2)
 tACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:401927/64‑2 (MQ=2)
 tACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:874609/64‑2 (MQ=2)
 tACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:475496/64‑2 (MQ=2)
 tACCCCACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGTGAGGTCCGAAGATccccca  <  1:19386/64‑2 (MQ=2)
                       |                                         
TTACCCCACCTACTAGCTAATCCCATCTGGGCACATCTGATGGCAAGAGGCCCGAAGGTCCCCCT  >  W3110S.gb/3694613‑3694677

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A