Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F28 I1 R1
|
354 |
41.7 |
3110465 |
93.1% |
2895842 |
61.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
905,153 |
Δ1 bp |
coding (139/324 nt) |
ybjQ → |
conserved hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 905,152 | 0 | T | . | 100.0%
| 33.0
/ NA
| 9 | coding (138/324 nt) | ybjQ | conserved hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (0/9); total (0/9) |
ATCGTTGGCGGACGTTCCGGTGCGTATGAAAAAGAACTGCGTAAAGCACGGGAGATCGCCTTTGAG > W3110S.gb/905138‑905203
|
atCGTTGGCGGACG‑TCCGGTGCGTATGAAAAAGAACTGCGTAAAGCACGGGAGATCGCCTTTGAg < 1:1168015/65‑1 (MQ=255)
atCGTTGGCGGACG‑TCCGGTGCGTATGAAAAAGAACTGCGTAAAGCACGGGAGATCGCCTTTGAg < 1:1223063/65‑1 (MQ=255)
atCGTTGGCGGACG‑TCCGGTGCGTATGAAAAAGAACTGCGTAAAGCACGGGAGATCGCCTTTGAg < 1:1621493/65‑1 (MQ=255)
atCGTTGGCGGACG‑TCCGGTGCGTATGAAAAAGAACTGCGTAAAGCACGGGAGATCGCCTTTGAg < 1:2335285/65‑1 (MQ=255)
atCGTTGGCGGACG‑TCCGGTGCGTATGAAAAAGAACTGCGTAAAGCACGGGAGATCGCCTTTGAg < 1:2924870/65‑1 (MQ=255)
tCGTTTGCGTACG‑TCCGGTGCGTATGAAAAATAACTTCGTAAAGCACGGGAGATCGCCTTTGAg < 1:3052752/64‑1 (MQ=255)
tCGTTGGCGGACG‑TCCGGTGCGTATGAAAAAGAACTGCGTAAAGCACGGGAGATCGCCTTTGAg < 1:1523015/64‑1 (MQ=255)
tCGTTGGCGGACG‑TCCGGTGCGTATGAAAAAGAACTGCGTAAAGCACGGGAGATCGCCTTTGAg < 1:2078970/64‑1 (MQ=255)
tCGTTGGCGGACG‑TCCGGTGCGTATGAAAAAGAACTGCGTAAAGCACGGGAGATCGCCTTTGAg < 1:983511/64‑1 (MQ=255)
|
ATCGTTGGCGGACGTTCCGGTGCGTATGAAAAAGAACTGCGTAAAGCACGGGAGATCGCCTTTGAG > W3110S.gb/905138‑905203
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
