Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F28 I3 R1
|
178 |
99.0 |
1887089 |
95.3% |
1798395 |
63.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
2,299,535 |
T→C |
G40G (GGA→GGG) |
ccmC ← |
heme exporter subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 2,299,535 | 0 | T | C | 98.7%
| 578.6
/ ‑2.5
| 152 | G40G (GGA→GGG) | ccmC | heme exporter subunit |
| Reads supporting (aligned to +/- strand): ref base T (2/0); new base C (150/0); total (152/0) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.86e-01 |
Only 100 of 152 total aligned reads displayed.
TGCAGGTAGATAATGCGGTAGCTATTTCCCTGCTGATAATCAGCCGGAGCAAAGCCGAATCCCCAGATCCAGCCGACGGTAAGCACGACCACACT > W3110S.gb/2299476‑2299570
|
tGCAGGTAGATAATGCGGTAGCTATTTCCCTGCTGATAATCAGCCGGAGCAAAGCCGAATc > 1:864334/1‑61 (MQ=255)
tGCAGGTAGATAATGCGGTAGCTATTTCCCTGCTGATAATCAGCCGGAGCAAAGCCGAATc > 1:83964/1‑61 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGCACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:108550/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGACCCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:227192/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATcc > 1:179836/1‑40 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCa > 1:1678224/1‑41 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCa > 1:123424/1‑41 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACg > 1:400787/1‑48 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTa > 1:1245251/1‑51 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTACGCACGACCACACt > 1:596389/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACg > 1:1206780/1‑57 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGCCCACACt > 1:749101/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACcaca > 1:6972/1‑63 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCacac > 1:526554/1‑64 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCacac > 1:1885752/1‑64 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:244236/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:630038/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:506000/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:504232/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:226074/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:477534/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:473128/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:42173/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:357427/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:271720/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:383713/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:381011/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:277379/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:371119/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:346062/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:352633/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:766295/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:957313/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:945935/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:941648/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:895726/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:844559/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:826318/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:79659/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:787735/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:781984/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:775989/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:534265/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:745822/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:73602/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:716383/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:680949/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:651646/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:640761/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:1870977/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:6161/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:590971/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:559399/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:1233039/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:1465565/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:1371496/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:1360860/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:1353272/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:1338085/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:1336822/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:1325837/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:1319267/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:1275863/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:127000/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:1256828/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:1469783/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:1213509/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:1187576/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:1173738/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:1115222/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:1108488/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:1078325/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:1063388/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:106012/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:1026833/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:1025557/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:1007781/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:1715151/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:1877254/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:100100/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:1819956/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:1818519/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:1804680/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:1765303/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:1751363/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:1746558/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:1731940/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:1728581/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:204764/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:1704171/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:1693676/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:1692309/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:1679807/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:1625892/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:1610942/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:1563412/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:1516737/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:1502041/1‑65 (MQ=255)
tgctgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGACCACACt > 1:1480178/1‑65 (MQ=255)
tgatgATAATCAGCCGGAGCAAAGCCGAACCCCCAGATCCAGCCGACGGTAAGCACGCCCACACt > 1:243120/4‑65 (MQ=255)
|
TGCAGGTAGATAATGCGGTAGCTATTTCCCTGCTGATAATCAGCCGGAGCAAAGCCGAATCCCCAGATCCAGCCGACGGTAAGCACGACCACACT > W3110S.gb/2299476‑2299570
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
