Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F28 I1 R1
|
354 |
41.7 |
3110465 |
93.1% |
2895842 |
61.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
1,275,296 |
A→G |
intergenic (‑120/‑206) |
ychN ← / → ychP |
conserved hypothetical protein/predicted invasin |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 1,275,296 | 0 | A | G | 100.0%
| 233.6
/ NA
| 62 | intergenic (‑120/‑206) | ychN/ychP | conserved hypothetical protein/predicted invasin |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (11/51); total (11/51) |
CAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAAGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGTTTTTCATTATTACCGG > W3110S.gb/1275243‑1275346
|
cAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAGGTTGCCAGTaa < 1:1130214/65‑1 (MQ=255)
cAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAGGTTGCCAGTaa < 1:367380/65‑1 (MQ=255)
cAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAGGTTGCCAGTaa < 1:84743/65‑1 (MQ=255)
cAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAGGTTGCCAGTaa < 1:950625/65‑1 (MQ=255)
gtCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAGGTTGCCAGTAATc > 1:958233/2‑65 (MQ=255)
ataggTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAGGTTGCCAGTAATc > 1:392466/4‑65 (MQ=255)
aTCGGTCACATTTTTAAGGGTTTTCCTGAAAGCGCGAGAAAATACGACAAAGGTTGCCAGTAATc > 1:120808/1‑65 (MQ=255)
aTCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAGGTTGCCAGTAATc > 1:12991/1‑65 (MQ=255)
aTCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAGGTTGCCAGTAATc > 1:1437964/1‑65 (MQ=255)
aTCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAGGTTGCCAGTAATc > 1:2294984/1‑65 (MQ=255)
aTCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAGGTTGCCAGTAATc > 1:1530216/1‑65 (MQ=255)
aTCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAGGTTGCCAGTAATc > 1:158137/1‑65 (MQ=255)
aTCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAGGTTGCCAGTAATc > 1:592789/1‑65 (MQ=255)
aTCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAGGTTGCCAGTAATc > 1:2702138/1‑65 (MQ=255)
aTCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAGGTTGCCAGTAATc > 1:2089248/1‑65 (MQ=255)
tCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAGGTTGCCAGTAATCg < 1:2156549/65‑1 (MQ=255)
tCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAGGTTGCCAGTAATCg < 1:2044619/65‑1 (MQ=255)
tCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAGGTTGCCAGTAATCg < 1:2681387/65‑1 (MQ=255)
tCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAGGTTGCCAGTAATCg < 1:1912886/65‑1 (MQ=255)
tCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAGGTTGCCAGTAATCg < 1:1657241/65‑1 (MQ=255)
tCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAGGTTGCCAGTAATCg < 1:1636285/65‑1 (MQ=255)
tCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAGGTTGCCAGTAATCg < 1:558721/65‑1 (MQ=255)
tCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAGGTTGCCAGTAATCg < 1:861470/65‑1 (MQ=255)
tCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAGGTTGCCAGTAATCg < 1:930380/65‑1 (MQ=255)
cTGAAAGCGCGAGAAAATACGACAAAGGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGtttt < 1:2397377/64‑1 (MQ=255)
cTGAAAGCGCGAGAAAATACGACAAAGGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGtttt < 1:2273434/64‑1 (MQ=255)
cTGAAAGCGCGAGAAAATACGACAAAGGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGtttt < 1:252145/64‑1 (MQ=255)
cTGAAAGCGCGAGAAAATACGACAAAGGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGtttt < 1:2915979/64‑1 (MQ=255)
cTGAAAGCGCGAGAAAATACGACAAAGGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGtttt < 1:372583/64‑1 (MQ=255)
cTGAAAGCGCGAGAAAATACGACAAAGGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGtttt < 1:988887/64‑1 (MQ=255)
cTGAAAGCGCGAGAAAATACGACAAAGGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGtttt < 1:102424/64‑1 (MQ=255)
cTGAAAGCGCGAGAAAATACGACAAAGGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGtttt < 1:866631/64‑1 (MQ=255)
cTGAAAGCGCGAGAAAATACGACAAAGGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGtttt < 1:2188409/64‑1 (MQ=255)
cTGAAAGCGCGAGAAAATACGACAAAGGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGtttt < 1:1313615/64‑1 (MQ=255)
cTGAAAGCGCGAGAAAATACGACAAAGGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGtttt < 1:1318277/64‑1 (MQ=255)
cTGAAAGCGCGAGAAAATACGACAAAGGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGtttt < 1:1370504/64‑1 (MQ=255)
cTGAAAGCGCGAGAAAATACGACAAAGGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGtttt < 1:1489223/64‑1 (MQ=255)
cTGAAAGCGCGAGAAAATACGACAAAGGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGtttt < 1:1610472/64‑1 (MQ=255)
cTGAAAGCGCGAGAAAATACGACAAAGGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGtttt < 1:1616126/64‑1 (MQ=255)
cTGAAAGCGCGAGAAAATACGACAAAGGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGtttt < 1:1630566/64‑1 (MQ=255)
cTGAAAGCGCGAGAAAATACGACAAAGGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGtttt < 1:1760487/64‑1 (MQ=255)
cTGAAAGCGCGAGAAAATACGACAAAGGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGtttt < 1:184289/64‑1 (MQ=255)
cTGAAAGCGCGAGAAAATACGACAAAGGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGtttt < 1:2075695/64‑1 (MQ=255)
cTGAAAGCGCGAGAAAATACGACAAAGGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGtttt < 1:2022464/64‑1 (MQ=255)
cTGAAAGCGCGAGAAAATACGACAAAGGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGtttt < 1:1933128/64‑1 (MQ=255)
tGAAAGCGCGAGAAAATACGACAAAGGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGtttt < 1:2932016/63‑1 (MQ=255)
gAAAGCGCGAGAAAATACGACAAAGGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGtttt < 1:2221136/62‑1 (MQ=255)
gaAAATACGACAAAGGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGTTTTTCATTATTACCgg < 1:1766862/65‑1 (MQ=255)
gaAAATACGACAAAGGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGTTTTTCATTATTACCgg < 1:2846342/65‑1 (MQ=255)
gaAAATACGACAAAGGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGTTTTTCATTATTACCgg < 1:2806376/65‑1 (MQ=255)
gaAAATACGACAAAGGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGTTTTTCATTATTACCgg < 1:3061763/65‑1 (MQ=255)
gaAAATACGACAAAGGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGTTTTTCATTATTACCgg < 1:3037886/65‑1 (MQ=255)
gaAAATACGACAAAGGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGTTTTTCATTATTACCgg < 1:813905/65‑1 (MQ=255)
gaAAATACGACAAAGGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGTTTTTCATTATTACCgg < 1:299135/65‑1 (MQ=255)
gaAAATACGACAAAGGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGTTTTTCATTATTACCgg < 1:1480153/65‑1 (MQ=255)
gaAAATACGACAAAGGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGTTTTTCATTATTACCgg < 1:2087879/65‑1 (MQ=255)
gaAAATACGACAAAGGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGTTTTTCATTATTACCgg < 1:881344/65‑1 (MQ=255)
gaAAATACGACAAAGGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGTTTTTCATTATTACCgg < 1:2364297/65‑1 (MQ=255)
gaAAATACGACAAAGGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGTTTTTCATTATTACCgg < 1:1294504/65‑1 (MQ=255)
gaAAATACGACAAAGGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGTTTTTCATTATTACCgg < 1:95983/65‑1 (MQ=255)
gaAAATACGACAAAGGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGTTTTTCATTATTACCgg < 1:1276319/65‑1 (MQ=255)
aaaaTACGACAAAGGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGTTTTTCATTATTACCgg < 1:498915/64‑1 (MQ=255)
|
CAATCGGTCACATTTTTAAGGATTTTCCTGAAAGCGCGAGAAAATACGACAAAAGTTGCCAGTAATCGTTATTCTTTAAGGCTATGGTTTTTCATTATTACCGG > W3110S.gb/1275243‑1275346
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
