Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F28 I1 R2
|
146 |
74.7 |
3299319 |
84.8% |
2797822 |
66.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
minE |
2,605,272 |
A→G |
L50L (CTT→CTC) |
uspA ← |
universal stress global response regulator |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 2,605,272 | 0 | A | G | 100.0%
| 483.1
/ NA
| 127 | L50L (CTT→CTC) | uspA | universal stress global response regulator |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (58/69); total (58/69) |
Only 100 of 127 total aligned reads displayed.
AGTGCATGATGTGTCTCTTCAGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATAAGCCCGGTGTATAGGTCAGAGTAGTTTACATCTACGTGGATCAGAGAAA > minE/2605213‑2605321
|
aGTGCATGATGTGTCTCTTCAGAGTTGCGTTTCTGCATATCACCCAGATTCACATCAATGAGccc > 1:1388361/1‑65 (MQ=255)
aGTGCATGATGTGTCTCTTCAGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATGAGccc > 1:1476304/1‑65 (MQ=255)
aGTGCATGATGTGTCTCTTCAGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATGAGccc > 1:136717/1‑65 (MQ=255)
aGTGCATGATGTGTCTCTTCAGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATGAGccc > 1:181584/1‑65 (MQ=255)
aGTGCATGATGTGTCTCTTCAGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATGAGccc > 1:1835467/1‑65 (MQ=255)
aGTGCATGATGTGTCTCTTCAGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATGAGccc > 1:3096182/1‑65 (MQ=255)
aGTGCATGATGTGTCTCTTCAGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATGAGccc > 1:2672930/1‑65 (MQ=255)
aGTGCATGATGTGTCTCTTCAGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATGAGccc > 1:2795230/1‑65 (MQ=255)
aGTGCATGATGTGTCTCTTCAGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATGAGccc > 1:2669075/1‑65 (MQ=255)
aGTGCATGATGTGTCTCTTCAGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATGAGccc > 1:381854/1‑65 (MQ=255)
aGTGCATGATGTGTCTCTTCAGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATGAGccc > 1:1143351/1‑65 (MQ=255)
aGTGCATGATGTGTCTCTTCAGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATGAGccc > 1:2461782/1‑65 (MQ=255)
aGTGCATGATGTGTCTCTTCAGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATGAGccc > 1:627068/1‑65 (MQ=255)
aGTGCATGATGTGTCTCTTCAGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATGAGccc > 1:2407611/1‑65 (MQ=255)
aGTGCATGATGTGTCTCTTCAGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATGAGccc > 1:794199/1‑65 (MQ=255)
aGTGCATGATGTGTCTCTTCAGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATGAGcac > 1:362523/1‑63 (MQ=255)
tgtCTCTTCAGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCagag < 1:2920764/70‑1 (MQ=255)
tgtCTCTTCAGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCagag < 1:1419113/70‑1 (MQ=255)
tgtCTCTTCAGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCagag < 1:2848855/70‑1 (MQ=255)
tgtCTCTTCAGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCagag < 1:1739231/70‑1 (MQ=255)
tgtCTCTTCAGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCagag < 1:3082238/70‑1 (MQ=255)
tgtCTCTTCAGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCagag < 1:1206327/70‑1 (MQ=255)
tgtCTCTTCAGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCagag < 1:2597066/70‑1 (MQ=255)
tgtCTCTTCAGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCagag < 1:2422572/70‑1 (MQ=255)
tgtCTCTTCAGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCagag < 1:2072764/70‑1 (MQ=255)
tgtCTCTTCAGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCagag < 1:1677955/70‑1 (MQ=255)
cAGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTAc > 1:2383036/1‑70 (MQ=255)
cAGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACa > 1:1801660/1‑71 (MQ=255)
cAGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACa > 1:1900068/1‑71 (MQ=255)
cAGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACa > 1:2463235/1‑71 (MQ=255)
cAGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACa > 1:1713728/1‑71 (MQ=255)
cAGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACa > 1:1952762/1‑71 (MQ=255)
cAGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACa > 1:1978410/1‑71 (MQ=255)
cAGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACa > 1:2231484/1‑71 (MQ=255)
cAGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACa > 1:166/1‑71 (MQ=255)
cAGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACa > 1:1654568/1‑71 (MQ=255)
cAGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACa > 1:1622526/1‑71 (MQ=255)
cAGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACa > 1:682777/1‑71 (MQ=255)
cAGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACa > 1:580855/1‑71 (MQ=255)
cAGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACa > 1:984694/1‑71 (MQ=255)
cAGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACa > 1:3275572/1‑71 (MQ=255)
cAGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACa > 1:1281817/1‑71 (MQ=255)
cAGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACa > 1:1360516/1‑71 (MQ=255)
cAGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACa > 1:3013571/1‑71 (MQ=255)
cAGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACa > 1:908605/1‑71 (MQ=255)
cAGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACa > 1:28115/1‑71 (MQ=255)
cAGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACa > 1:1528999/1‑71 (MQ=255)
cAGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACa > 1:155356/1‑71 (MQ=255)
cAGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACa > 1:1582940/1‑71 (MQ=255)
cAGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACa > 1:1650123/1‑71 (MQ=255)
agaTGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACAt > 1:3289325/1‑69 (MQ=255)
agaTGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACATc > 1:45576/1‑70 (MQ=255)
agaTGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACATc > 1:656838/1‑70 (MQ=255)
agaTGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACATc > 1:76463/1‑70 (MQ=255)
agaTGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACATc > 1:1011363/1‑70 (MQ=255)
agaTGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACATc > 1:10381/1‑70 (MQ=255)
agaTGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACATc > 1:1338646/1‑70 (MQ=255)
tGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACATCTACg < 1:1178558/71‑1 (MQ=255)
tGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACATCTACg < 1:1456522/71‑1 (MQ=255)
tGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACATCTACg < 1:910986/71‑1 (MQ=255)
tGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACATCTACg < 1:3016812/71‑1 (MQ=255)
tGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACATCTACg < 1:1364353/71‑1 (MQ=255)
tGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACATCTACg < 1:3140000/71‑1 (MQ=255)
tGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACATCTACg < 1:3254915/71‑1 (MQ=255)
tGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACATCTACg < 1:1254774/71‑1 (MQ=255)
tGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACATCTACg < 1:1231797/71‑1 (MQ=255)
tGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACATCTACg < 1:231579/71‑1 (MQ=255)
tGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACATCTACg < 1:1164770/71‑1 (MQ=255)
tGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACATCTACg < 1:113290/71‑1 (MQ=255)
tGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACATCTACg < 1:563895/71‑1 (MQ=255)
tGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACATCTACg < 1:572569/71‑1 (MQ=255)
tGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACATCTACg < 1:1106111/71‑1 (MQ=255)
tGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACATCTACg < 1:109439/71‑1 (MQ=255)
tGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACATCTACg < 1:1029603/71‑1 (MQ=255)
tGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACATCTACg < 1:2890251/71‑1 (MQ=255)
tGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACATCTACg < 1:2082357/71‑1 (MQ=255)
tGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACATCTACg < 1:842884/71‑1 (MQ=255)
tGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACATCTACg < 1:2057411/71‑1 (MQ=255)
tGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACATCTACg < 1:903140/71‑1 (MQ=255)
tGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACATCTACg < 1:2025319/71‑1 (MQ=255)
tGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACATCTACg < 1:1932972/71‑1 (MQ=255)
tGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACATCTACg < 1:2480523/71‑1 (MQ=255)
tGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACATCTACg < 1:1785116/71‑1 (MQ=255)
tGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACATCTACg < 1:2565166/71‑1 (MQ=255)
tGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACATCTACg < 1:2578606/71‑1 (MQ=255)
tGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACATCTACg < 1:1579109/71‑1 (MQ=255)
tGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACATCTACg < 1:1578197/71‑1 (MQ=255)
tGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACATCTACg < 1:1521186/71‑1 (MQ=255)
tGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACATCTACg < 1:1511902/71‑1 (MQ=255)
tGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACATCTACg < 1:1470952/71‑1 (MQ=255)
tGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACATCTACg < 1:2898109/71‑1 (MQ=255)
tGCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGGCAGAGTAGTTTACATCTACg < 1:1466274/71‑1 (MQ=255)
gCGTTTCTGCATATCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACATCTACg < 1:1025465/70‑1 (MQ=255)
cGTTTCTGCATATCACCCAGATTCACATCTATGAGCCCGGTGTATAGGTCAGAGTAGTTTACATCTACg < 1:2077147/69‑1 (MQ=255)
tatCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACATCTACg < 1:2561155/59‑1 (MQ=255)
tCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACATCTACGTGGATCAGAGaaa < 1:871651/70‑1 (MQ=255)
tCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACATCTACGTGGATCAGAGaaa < 1:1418962/70‑1 (MQ=255)
tCACCCAGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACATCTACGTGGATCAGAGaaa < 1:1415277/70‑1 (MQ=255)
aGATTCACATCAATGAGCCCGGTGTATAGGTCagag < 1:2051066/36‑1 (MQ=255)
aGATTCACATCAATGAGCCCGGTGTATAGGTCAGAGTAGTTTACATCTACg < 1:1179278/51‑1 (MQ=255)
|
AGTGCATGATGTGTCTCTTCAGAGATGCGTTTCTGCATATCACCCAGATTCACATCAATAAGCCCGGTGTATAGGTCAGAGTAGTTTACATCTACGTGGATCAGAGAAA > minE/2605213‑2605321
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
