Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F3 I0 R1
|
328 |
90.1 |
2317887 |
85.2% |
1974839 |
62.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
2,136,139 |
G→A |
100% |
F64F (TTC→TTT) |
pnp ← |
polynucleotide phosphorylase/polyadenylase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 2,136,139 | 0 | G | A | 86.8%
| 234.2
/ 22.6
| 91 | F64F (TTC→TTT) | pnp | polynucleotide phosphorylase/polyadenylase |
| Reads supporting (aligned to +/- strand): ref base G (1/11); new base A (0/79); total (1/90) |
| Fisher's exact test for biased strand distribution p-value = 1.32e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.48e-01 |
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
Only 100 of 106 total aligned reads displayed.
AACGGTCAGTGGGAAGAAGTCCTGACCTGGTTTGGCTTTTTTCTGGCCAACAACGGTAACGAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGCCT > minE/2136079‑2136185
|
aaCGGTCAGTGGGAAGAAGTCCTGACCTGGTTTGGCTTTTTTCTGGCCAACAACGGTAACGAATAcc < 1:1963306/67‑1 (MQ=255)
gCTTTTTTCTGGCCAACAACGGTAACGAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGc > 1:142179/1‑65 (MQ=255)
tttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:1051375/66‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:2028059/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:372767/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:246251/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:2315864/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:2269899/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:2225609/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:2192971/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:2188338/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:2146366/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:2133927/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:2054446/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:1812152/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:2014483/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:199564/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:1974420/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:1881430/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:1840942/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:1837848/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:1828605/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:1866955/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:767067/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:944000/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:885352/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:876159/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:875489/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:871073/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:854060/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:79943/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:77376/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:770129/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:769432/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:417402/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:761634/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:635475/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:634292/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:61076/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:605179/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:581890/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:56947/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:537492/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:42573/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:1191901/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:1491962/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:1477711/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:1442376/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:1426358/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:1396574/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:1331202/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:129031/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:1267284/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:1202286/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:1802160/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:1190582/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:1188435/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:1148455/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:1137174/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:1113199/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:110129/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:106184/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:1060956/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:1031010/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:1540405/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:1803209/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:1797152/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:1733728/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:167051/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:1652886/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:1574573/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:1570186/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:1558987/65‑1 (MQ=255)
ttCTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCACTAGc < 1:1899959/65‑1 (MQ=255)
cTGACCAACAACGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:1013578/63‑1 (MQ=255)
acGGTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:2020043/53‑1 (MQ=255)
ggTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:1506060/51‑1 (MQ=255)
gTAACAAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:1030269/50‑1 (MQ=255)
aCGAATACCGCGGTGTCATCCATGCTAACCATACCAGCGGCAGTAGc < 1:548423/47‑1 (MQ=255)
aCGAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:2288186/47‑1 (MQ=255)
aCGAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:883617/47‑1 (MQ=255)
aCGAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:832500/47‑1 (MQ=255)
aCGAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:789739/47‑1 (MQ=255)
aCGAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:1691149/47‑1 (MQ=255)
aCGAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:657959/47‑1 (MQ=255)
aCGAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:633080/47‑1 (MQ=255)
aCGAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGc < 1:1605955/47‑1 (MQ=255)
gAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGCCt > 1:1667000/1‑47 (MQ=255)
gAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGCCt > 1:304912/1‑47 (MQ=255)
gAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGCCt > 1:1880883/1‑47 (MQ=255)
gAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGCCt > 1:1460883/1‑47 (MQ=255)
gAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGCCt > 1:1219832/1‑47 (MQ=255)
gAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGCCt > 1:2285424/1‑47 (MQ=255)
gAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGCCt > 1:1629937/1‑47 (MQ=255)
gAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGCCt > 1:1077820/1‑47 (MQ=255)
gAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGCCt > 1:1071074/1‑47 (MQ=255)
gAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGCCt > 1:1283076/1‑47 (MQ=255)
gAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGCCt > 1:1823099/1‑47 (MQ=255)
gAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGCCt > 1:1627015/1‑47 (MQ=255)
gAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGCCt > 1:1443127/1‑47 (MQ=255)
|
AACGGTCAGTGGGAAGAAGTCCTGACCTGGTTTGGCTTTTTTCTGGCCAACAACGGTAACGAATACCGCGGTGTCATCCATGCTAACCATAACAGCGGCAGTAGCCT > minE/2136079‑2136185
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
