Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F3 I0 R1
|
328 |
90.1 |
2317887 |
85.2% |
1974839 |
62.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
2,295,312 |
G→C |
100% |
V162V (GTC→GTG) |
yijE ← |
predicted permease |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 2,295,312 | 0 | G | C | 100.0%
| 251.5
/ NA
| 72 | V162V (GTC→GTG) | yijE | predicted permease |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base C (72/0); total (72/0) |
| Rejected as polymorphism: Frequency below/above cutoff threshold. |
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
AACTGACGCCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCT > minE/2295308‑2295373
|
aaCTCACACCGGAGAGGATTGCCAGCATGGCACttt > 1:2234256/1‑36 (MQ=37)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGTAATCGAGTTGCCACGGCt > 1:748752/1‑66 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGc > 1:955914/1‑65 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGc > 1:1598050/1‑65 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCt > 1:310831/1‑66 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCt > 1:462207/1‑66 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCt > 1:457640/1‑66 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCt > 1:43607/1‑66 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCt > 1:358007/1‑66 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCt > 1:35393/1‑66 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCt > 1:333869/1‑66 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCt > 1:316643/1‑66 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCt > 1:557596/1‑66 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCt > 1:286768/1‑66 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCt > 1:257549/1‑66 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCt > 1:2268789/1‑66 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCt > 1:2228033/1‑66 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCt > 1:2227827/1‑66 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCt > 1:2150168/1‑66 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCt > 1:2113666/1‑66 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCt > 1:769759/1‑66 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCt > 1:968143/1‑66 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCt > 1:962260/1‑66 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCt > 1:946318/1‑66 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCt > 1:874209/1‑66 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCt > 1:85681/1‑66 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCt > 1:833125/1‑66 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCt > 1:776709/1‑66 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCt > 1:772228/1‑66 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCt > 1:502100/1‑66 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCt > 1:751564/1‑66 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCt > 1:715542/1‑66 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCt > 1:702372/1‑66 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCt > 1:630307/1‑66 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCt > 1:573989/1‑66 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCt > 1:2055288/1‑66 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCt > 1:545788/1‑66 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCt > 1:1440588/1‑66 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCt > 1:1622113/1‑66 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCt > 1:1621052/1‑66 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCt > 1:1611512/1‑66 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCt > 1:1534438/1‑66 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCt > 1:1533481/1‑66 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCt > 1:1509185/1‑66 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCt > 1:1477016/1‑66 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCt > 1:1452525/1‑66 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCt > 1:1662029/1‑66 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCt > 1:1430304/1‑66 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCt > 1:1420839/1‑66 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCt > 1:141732/1‑66 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCt > 1:1332081/1‑66 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCt > 1:1098055/1‑66 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCt > 1:1084141/1‑66 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCt > 1:1069639/1‑66 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCt > 1:180468/1‑66 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCt > 1:2017302/1‑66 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCt > 1:2003469/1‑66 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCt > 1:1951477/1‑66 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCt > 1:194742/1‑66 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCt > 1:1922428/1‑66 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCt > 1:1918069/1‑66 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCt > 1:1851899/1‑66 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCt > 1:1015669/1‑66 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCt > 1:1797412/1‑66 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCt > 1:1780235/1‑66 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCt > 1:1773980/1‑66 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCt > 1:1735680/1‑66 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCt > 1:1727714/1‑66 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCt > 1:1720397/1‑66 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCt > 1:1705321/1‑66 (MQ=255)
aaCTCACACCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCt > 1:1662563/1‑66 (MQ=255)
aaCTCACACCGGAGAGCATTGCCAGCATGGCACTTTTCATCGAAGACAAATCGAGTTGCCACGGCt > 1:1079513/1‑66 (MQ=255)
|
AACTGACGCCGGAGAGGATTGCCAGCATGGCACTTTTCATCGAAGAGAAATCGAGTTGCCACGGCT > minE/2295308‑2295373
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
