Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F21 I0 R1 476 35.3 2812105 96.7% 2719305 61.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC W3110S.gb 3,742,938 Δ1,336 bp 100% insD–insC insD, insC

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ W3110S.gb 3742938–3744266 3744273 8–1336 42 [0] [0] 41 insD–insC insD,insC

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? W3110S.gb = 37429370 (0.000)31 (1.260) 17/84 NT 100% intergenic (‑123/+9) yieE/insD predicted phosphopantetheinyl transferase/IS2 element protein
?W3110S.gb 3744274 = 0 (0.000)intergenic (‑100/+21) insC/yidZ IS2 element protein/predicted DNA‑binding transcriptional regulator

GATK/CNVnator alignment

N/A