Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F21 I0 R1
|
57 |
0.0 |
661283 |
90.4% |
597799 |
68.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
1,686,509:1 |
+TTA |
100% |
intergenic (+484/+334) |
sseA → / ← sseB |
3‑mercaptopyruvate sulfurtransferase/rhodanase‑like enzyme, sulfur transfer from thiosulfate |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 1,686,509 | 1 | . | T | 100.0%
| 91.4
/ NA
| 40 | intergenic (+484/+334) | sseA/sseB | 3‑mercaptopyruvate sulfurtransferase/rhodanase‑like enzyme, sulfur transfer from thiosulfate |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base T (40/0); total (40/0) |
| Rejected as polymorphism: Frequency below/above cutoff threshold. |
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
| * | minE | 1,686,509 | 2 | . | T | 100.0%
| 92.0
/ NA
| 40 | intergenic (+484/+334) | sseA/sseB | 3‑mercaptopyruvate sulfurtransferase/rhodanase‑like enzyme, sulfur transfer from thiosulfate |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base T (40/0); total (40/0) |
| Rejected as polymorphism: Frequency below/above cutoff threshold. |
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
| * | minE | 1,686,509 | 3 | . | A | 100.0%
| 91.8
/ NA
| 40 | intergenic (+484/+334) | sseA/sseB | 3‑mercaptopyruvate sulfurtransferase/rhodanase‑like enzyme, sulfur transfer from thiosulfate |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base A (40/0); total (40/0) |
| Rejected as polymorphism: Frequency below/above cutoff threshold. |
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
CTCGCCAGTAACTCTCTTTTTGTCAAGCAAAAGAGAG‑‑‑TTATTATTGTTCTGTTAGTGTATTATCCACT > minE/1686473‑1686540
|||
cacGCCAGTAACTCTCTTTTTGTCAAGCAAAAGAGAGTTATTATTATTGTTCTGTTAGTGTATTATCCACt > 1:628617/3‑71 (MQ=18)
cTCGCCAGTAACTCTCTTTTTGTCAAGCAAAAGAGAGTTATTATTATTGTTCTGTTAGTGTATTATCCAc > 1:33214/1‑70 (MQ=18)
cTCGCCAGTAACTCTCTTTTTGTCAAGCAAAAGAGAGTTATTATTATTGTTCTGTTAGTGTATTATCCAc > 1:534008/1‑70 (MQ=18)
cTCGCCAGTAACTCTCTTTTTGTCAAGCAAAAGAGAGTTATTATTATTGTTCTGTTAGTGTATTATCCACt > 1:536827/1‑71 (MQ=18)
cTCGCCAGTAACTCTCTTTTTGTCAAGCAAAAGAGAGTTATTATTATTGTTCTGTTAGTGTATTATCCACt > 1:416556/1‑71 (MQ=18)
cTCGCCAGTAACTCTCTTTTTGTCAAGCAAAAGAGAGTTATTATTATTGTTCTGTTAGTGTATTATCCACt > 1:422540/1‑71 (MQ=18)
cTCGCCAGTAACTCTCTTTTTGTCAAGCAAAAGAGAGTTATTATTATTGTTCTGTTAGTGTATTATCCACt > 1:425504/1‑71 (MQ=18)
cTCGCCAGTAACTCTCTTTTTGTCAAGCAAAAGAGAGTTATTATTATTGTTCTGTTAGTGTATTATCCACt > 1:445095/1‑71 (MQ=18)
cTCGCCAGTAACTCTCTTTTTGTCAAGCAAAAGAGAGTTATTATTATTGTTCTGTTAGTGTATTATCCACt > 1:4664/1‑71 (MQ=18)
cTCGCCAGTAACTCTCTTTTTGTCAAGCAAAAGAGAGTTATTATTATTGTTCTGTTAGTGTATTATCCACt > 1:472485/1‑71 (MQ=18)
cTCGCCAGTAACTCTCTTTTTGTCAAGCAAAAGAGAGTTATTATTATTGTTCTGTTAGTGTATTATCCACt > 1:508357/1‑71 (MQ=18)
cTCGCCAGTAACTCTCTTTTTGTCAAGCAAAAGAGAGTTATTATTATTGTTCTGTTAGTGTATTATCCACt > 1:519277/1‑71 (MQ=18)
cTCGCCAGTAACTCTCTTTTTGTCAAGCAAAAGAGAGTTATTATTATTGTTCTGTTAGTGTATTATCCACt > 1:396033/1‑71 (MQ=18)
cTCGCCAGTAACTCTCTTTTTGTCAAGCAAAAGAGAGTTATTATTATTGTTCTGTTAGTGTATTATCCACt > 1:53766/1‑71 (MQ=18)
cTCGCCAGTAACTCTCTTTTTGTCAAGCAAAAGAGAGTTATTATTATTGTTCTGTTAGTGTATTATCCACt > 1:537887/1‑71 (MQ=18)
cTCGCCAGTAACTCTCTTTTTGTCAAGCAAAAGAGAGTTATTATTATTGTTCTGTTAGTGTATTATCCACt > 1:563080/1‑71 (MQ=18)
cTCGCCAGTAACTCTCTTTTTGTCAAGCAAAAGAGAGTTATTATTATTGTTCTGTTAGTGTATTATCCACt > 1:566984/1‑71 (MQ=18)
cTCGCCAGTAACTCTCTTTTTGTCAAGCAAAAGAGAGTTATTATTATTGTTCTGTTAGTGTATTATCCACt > 1:584995/1‑71 (MQ=18)
cTCGCCAGTAACTCTCTTTTTGTCAAGCAAAAGAGAGTTATTATTATTGTTCTGTTAGTGTATTATCCACt > 1:612679/1‑71 (MQ=18)
cTCGCCAGTAACTCTCTTTTTGTCAAGCAAAAGAGAGTTATTATTATTGTTCTGTTAGTGTATTATCCACt > 1:633783/1‑71 (MQ=18)
cTCGCCAGTAACTCTCTTTTTGTCAAGCAAAAGAGAGTTATTATTATTGTTCTGTTAGTGTATTATCCACt > 1:68740/1‑71 (MQ=18)
cTCGCCAGTAACTCTCTTTTTGTCAAGCAAAAGAGAGTTATTATTATTGTTCTGTTAGTGTATTATCCACt > 1:248733/1‑71 (MQ=18)
cTCGCCAGTAACTCTCTTTTTGTCAAGCAAAAGAGAGTTATTATTATTGTTCTGTTAGTGTATTATCCACt > 1:144397/1‑71 (MQ=18)
cTCGCCAGTAACTCTCTTTTTGTCAAGCAAAAGAGAGTTATTATTATTGTTCTGTTAGTGTATTATCCACt > 1:155158/1‑71 (MQ=18)
cTCGCCAGTAACTCTCTTTTTGTCAAGCAAAAGAGAGTTATTATTATTGTTCTGTTAGTGTATTATCCACt > 1:156224/1‑71 (MQ=18)
cTCGCCAGTAACTCTCTTTTTGTCAAGCAAAAGAGAGTTATTATTATTGTTCTGTTAGTGTATTATCCACt > 1:158787/1‑71 (MQ=18)
cTCGCCAGTAACTCTCTTTTTGTCAAGCAAAAGAGAGTTATTATTATTGTTCTGTTAGTGTATTATCCACt > 1:179171/1‑71 (MQ=18)
cTCGCCAGTAACTCTCTTTTTGTCAAGCAAAAGAGAGTTATTATTATTGTTCTGTTAGTGTATTATCCACt > 1:192609/1‑71 (MQ=18)
cTCGCCAGTAACTCTCTTTTTGTCAAGCAAAAGAGAGTTATTATTATTGTTCTGTTAGTGTATTATCCACt > 1:221282/1‑71 (MQ=18)
cTCGCCAGTAACTCTCTTTTTGTCAAGCAAAAGAGAGTTATTATTATTGTTCTGTTAGTGTATTATCCACt > 1:22490/1‑71 (MQ=18)
cTCGCCAGTAACTCTCTTTTTGTCAAGCAAAAGAGAGTTATTATTATTGTTCTGTTAGTGTATTATCCACt > 1:241043/1‑71 (MQ=18)
cTCGCCAGTAACTCTCTTTTTGTCAAGCAAAAGAGAGTTATTATTATTGTTCTGTTAGTGTATTATCCACt > 1:133338/1‑71 (MQ=18)
cTCGCCAGTAACTCTCTTTTTGTCAAGCAAAAGAGAGTTATTATTATTGTTCTGTTAGTGTATTATCCACt > 1:250072/1‑71 (MQ=18)
cTCGCCAGTAACTCTCTTTTTGTCAAGCAAAAGAGAGTTATTATTATTGTTCTGTTAGTGTATTATCCACt > 1:253345/1‑71 (MQ=18)
cTCGCCAGTAACTCTCTTTTTGTCAAGCAAAAGAGAGTTATTATTATTGTTCTGTTAGTGTATTATCCACt > 1:300461/1‑71 (MQ=18)
cTCGCCAGTAACTCTCTTTTTGTCAAGCAAAAGAGAGTTATTATTATTGTTCTGTTAGTGTATTATCCACt > 1:304162/1‑71 (MQ=18)
cTCGCCAGTAACTCTCTTTTTGTCAAGCAAAAGAGAGTTATTATTATTGTTCTGTTAGTGTATTATCCACt > 1:338334/1‑71 (MQ=18)
cTCGCCAGTAACTCTCTTTTTGTCAAGCAAAAGAGAGTTATTATTATTGTTCTGTTAGTGTATTATCCACt > 1:347866/1‑71 (MQ=18)
cTCGCCAGTAACTCTCTTTTTGTCAAGCAAAAGAGAGTTATTATTATTGTTCTGTTAGTGTATTATCCACt > 1:37821/1‑71 (MQ=18)
cTCGCCAGTAACTCTCTTTTTGTCAAGCAAAAGAGAGTTATTATTATTGTTCTGTTAGTGTATTATCCACt > 1:395140/1‑71 (MQ=18)
|||
CTCGCCAGTAACTCTCTTTTTGTCAAGCAAAAGAGAG‑‑‑TTATTATTGTTCTGTTAGTGTATTATCCACT > minE/1686473‑1686540
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
