Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F28 I3 R2 68 0.0 1607493 93.4% 1501398 66.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA W3110S.gb 1,842,575 Δ2 bp coding (542‑543/621 nt) ynjF ← predicted phosphatidyl transferase, inner membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*W3110S.gb1,842,5750G.100.0% 337.5 / NA 75coding (543/621 nt)ynjFpredicted phosphatidyl transferase, inner membrane protein
Reads supporting (aligned to +/- strand):  ref base G (0/0);  new base . (0/75);  total (0/75)
*W3110S.gb1,842,5760A.100.0% 337.5 / NA 75coding (542/621 nt)ynjFpredicted phosphatidyl transferase, inner membrane protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base . (0/75);  total (0/75)

TAAAGGTCGTCATCCAGCACAACGCACCGAAGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAT  >  W3110S.gb/1842547‑1842617
                            ||                                         
tAAAGGTCGTCATCCAGCACATCGCACC‑‑AGATCGACGCAAACCACGCAAACCATGGAGGGAATAAACAt  <  1:633401/69‑1 (MQ=255)
tAAAGGTCGTCATCCAGCACAACGCACC‑‑AGATCCTCGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:826494/69‑1 (MQ=255)
tAAAGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCTCGCAAACCATGCAGGGAATAAACAt  <  1:270780/69‑1 (MQ=255)
tAAAGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACTCAAACCATGCAGGGAATAAACAt  <  1:930188/69‑1 (MQ=255)
tAAAGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:662557/69‑1 (MQ=255)
tAAAGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:695820/69‑1 (MQ=255)
tAAAGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:659968/69‑1 (MQ=255)
tAAAGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:636550/69‑1 (MQ=255)
tAAAGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:59537/69‑1 (MQ=255)
tAAAGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:531828/69‑1 (MQ=255)
tAAAGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:503507/69‑1 (MQ=255)
tAAAGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:464787/69‑1 (MQ=255)
tAAAGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:445005/69‑1 (MQ=255)
tAAAGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:436099/69‑1 (MQ=255)
tAAAGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:383635/69‑1 (MQ=255)
tAAAGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:37105/69‑1 (MQ=255)
tAAAGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:1013998/69‑1 (MQ=255)
tAAAGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:291558/69‑1 (MQ=255)
tAAAGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:670473/69‑1 (MQ=255)
tAAAGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:327042/69‑1 (MQ=255)
tAAAGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:721603/69‑1 (MQ=255)
tAAAGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:742077/69‑1 (MQ=255)
tAAAGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:770954/69‑1 (MQ=255)
tAAAGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:834720/69‑1 (MQ=255)
tAAAGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:842672/69‑1 (MQ=255)
tAAAGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:862647/69‑1 (MQ=255)
tAAAGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:86562/69‑1 (MQ=255)
tAAAGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:86618/69‑1 (MQ=255)
tAAAGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:874584/69‑1 (MQ=255)
tAAAGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:943959/69‑1 (MQ=255)
tAAAGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:955545/69‑1 (MQ=255)
tAAAGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:965155/69‑1 (MQ=255)
tAAAGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:970367/69‑1 (MQ=255)
tAAAGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:98548/69‑1 (MQ=255)
tAAAGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:1536066/69‑1 (MQ=255)
tAAAGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:1202534/69‑1 (MQ=255)
tAAAGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:12865/69‑1 (MQ=255)
tAAAGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:1295257/69‑1 (MQ=255)
tAAAGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:1302463/69‑1 (MQ=255)
tAAAGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:1202256/69‑1 (MQ=255)
tAAAGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:119933/69‑1 (MQ=255)
tAAAGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:1157348/69‑1 (MQ=255)
tAAAGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:1382234/69‑1 (MQ=255)
tAAAGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:1416344/69‑1 (MQ=255)
tAAAGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:1141415/69‑1 (MQ=255)
tAAAGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:1491406/69‑1 (MQ=255)
tAAAGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:270568/69‑1 (MQ=255)
tAAAGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:1505585/69‑1 (MQ=255)
tAAAGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:1518591/69‑1 (MQ=255)
tAAAGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:1521585/69‑1 (MQ=255)
tAAAGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:106397/69‑1 (MQ=255)
tAAAGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:1051660/69‑1 (MQ=255)
tAAAGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:267617/69‑1 (MQ=255)
tAAAGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:255781/69‑1 (MQ=255)
tAAAGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:250515/69‑1 (MQ=255)
tAAAGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:1055234/69‑1 (MQ=255)
tAAAGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:232091/69‑1 (MQ=255)
tAAAGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:22656/69‑1 (MQ=255)
tAAAGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:1119961/69‑1 (MQ=255)
tAAAGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:209212/69‑1 (MQ=255)
tAAAGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:193890/69‑1 (MQ=255)
tAAAGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:171154/69‑1 (MQ=255)
tAAAGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:1594000/69‑1 (MQ=255)
tAAAGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:1583640/69‑1 (MQ=255)
tAAAGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:1572869/69‑1 (MQ=255)
tAAAGGCCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:842167/69‑1 (MQ=255)
 aaaGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:712630/68‑1 (MQ=255)
 aaaGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:1360685/68‑1 (MQ=255)
 aaaGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:804060/68‑1 (MQ=255)
 aaaGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:724764/68‑1 (MQ=255)
 aaaGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:217734/68‑1 (MQ=255)
 aaaGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:378150/68‑1 (MQ=255)
 aaaGGTCGTCATCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:279556/68‑1 (MQ=255)
           aTCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:771499/58‑1 (MQ=255)
           aTCCAGCACAACGCACC‑‑AGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAt  <  1:442037/58‑1 (MQ=255)
                            ||                                         
TAAAGGTCGTCATCCAGCACAACGCACCGAAGATCCACGCAAACCACGCAAACCATGCAGGGAATAAACAT  >  W3110S.gb/1842547‑1842617

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A