Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F28 I3 R2
|
68 |
0.0 |
1607493 |
93.4% |
1501398 |
66.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
3,317,444 |
Δ1 bp |
coding (418/453 nt) |
yhbC ← |
conserved hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 3,317,443 | 0 | T | . | 100.0%
| 438.7
/ NA
| 97 | coding (419/453 nt) | yhbC | conserved hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (97/0); total (97/0) |
CAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATATTACTCAGCGCGAACACTTCATCTTTACC > W3110S.gb/3317402‑3317471
|
cAGACTATTAAAGGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTa > 1:6720/1‑67 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGatatac > 1:1146420/1‑42 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAgc > 1:576775/1‑49 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCTAACACTTCATCTTTAc > 1:92907/1‑68 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGCACACTTCATCTTTAc > 1:774909/1‑68 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCtt > 1:1267714/1‑65 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTa > 1:1315972/1‑67 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTa > 1:774002/1‑67 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:602707/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:68013/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:595043/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:592145/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:580617/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:573173/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:561872/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:560064/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:554802/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:511921/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:511066/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:509019/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:49967/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:491487/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:491050/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:453948/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:448177/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:442852/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:433912/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:39987/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:753269/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:997432/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:953384/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:939279/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:930718/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:929893/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:87127/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:866636/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:817720/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:795983/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:790768/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:614152/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:749110/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:721827/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:719423/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:70789/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:704073/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:701249/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:385115/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:654710/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:643067/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:117016/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:1485638/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:1470590/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:1421765/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:1414064/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:1409550/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:1337662/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:1300046/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:127283/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:1245234/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:122804/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:1173711/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:1483106/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:116686/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:116568/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:1140211/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:1132850/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:1122847/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:1114448/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:1089220/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:1087578/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:1078828/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:1069372/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:248597/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:344658/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:330211/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:328649/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:294022/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:281684/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:270361/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:255438/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:149079/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:364740/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:215215/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:372401/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:201536/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:162833/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:1576649/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:1548712/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:1539470/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:1494570/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:1491699/1‑69 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAc > 1:253929/1‑68 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAc > 1:355683/1‑68 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAc > 1:385535/1‑68 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAc > 1:833585/1‑68 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAc > 1:1223175/1‑68 (MQ=255)
cAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAc > 1:743880/1‑68 (MQ=255)
cAGACTATTAAAAATGGGGAACCAGGTTCGCCTTCTGGATA‑TACTCAGCGCGAACACTTCATCTTTAcc > 1:1060013/1‑69 (MQ=255)
|
CAGACTATTAAAAGTGGGGAACCAGGTTCGCCTTCTGGATATTACTCAGCGCGAACACTTCATCTTTACC > W3110S.gb/3317402‑3317471
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
