Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F28 I3 R2
|
68 |
0.0 |
1607493 |
93.4% |
1501398 |
66.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
W3110S.gb |
3,853,352 |
A→G |
S76S (TCT→TCC) |
envC ← |
protease with a role in cell division |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | W3110S.gb | 3,853,352 | 0 | A | G | 100.0%
| 181.4
/ NA
| 50 | S76S (TCT→TCC) | envC | protease with a role in cell division |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (50/0); total (50/0) |
CAATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCTTCAGAGATCG > W3110S.gb/3853291‑3853359
|
caATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCTTCGgagagca > 1:592222/1‑66 (MQ=255)
caATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCTTCGgagagca > 1:102617/1‑66 (MQ=255)
caATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCTTCGgagagca > 1:205861/1‑66 (MQ=255)
caATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCTTCGgagagca > 1:235891/1‑66 (MQ=255)
caATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCTTCGgagagca > 1:250563/1‑66 (MQ=255)
caATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCTTCGgagagca > 1:343738/1‑66 (MQ=255)
caATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCTTCGgagagca > 1:374253/1‑66 (MQ=255)
caATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCTTCGgagagca > 1:416422/1‑66 (MQ=255)
caATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCTTCGgagagca > 1:482274/1‑66 (MQ=255)
caATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCTTCGgagagca > 1:492168/1‑66 (MQ=255)
caATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCTTCGgagagca > 1:530240/1‑66 (MQ=255)
caATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCTTCGgagagca > 1:584606/1‑66 (MQ=255)
caATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCTTCGgagagca > 1:590371/1‑66 (MQ=255)
caATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCTTCGgagagca > 1:1596004/1‑66 (MQ=255)
caATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCTTCGgagagca > 1:649007/1‑66 (MQ=255)
caATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCTTCGgagagca > 1:680067/1‑66 (MQ=255)
caATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCTTCGgagagca > 1:728596/1‑66 (MQ=255)
caATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCTTCGgagagca > 1:81930/1‑66 (MQ=255)
caATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCTTCGgagagca > 1:869264/1‑66 (MQ=255)
caATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCTTCGgagagca > 1:904/1‑66 (MQ=255)
caATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCTTCGgagagca > 1:934058/1‑66 (MQ=255)
caATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCTTCGgagagca > 1:96040/1‑66 (MQ=255)
caATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCTTCGgagagca > 1:968006/1‑66 (MQ=255)
caATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCTTCGgagagca > 1:983887/1‑66 (MQ=255)
caATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCTTCGgagagca > 1:993274/1‑66 (MQ=255)
caATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCTTCGgagagca > 1:1316971/1‑66 (MQ=255)
caATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCTTCGgagagca > 1:1040575/1‑66 (MQ=255)
caATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCTTCGgagagca > 1:1094612/1‑66 (MQ=255)
caATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCTTCGgagagca > 1:113860/1‑66 (MQ=255)
caATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCTTCGgagagca > 1:1155052/1‑66 (MQ=255)
caATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCTTCGgagagca > 1:1170833/1‑66 (MQ=255)
caATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCTTCGgagagca > 1:1171667/1‑66 (MQ=255)
caATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCTTCGgagagca > 1:1183104/1‑66 (MQ=255)
caATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCTTCGgagagca > 1:1195635/1‑66 (MQ=255)
caATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCTTCGgagagca > 1:1223717/1‑66 (MQ=255)
caATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCTTCGgagagca > 1:1242469/1‑66 (MQ=255)
caATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCTTCGgagagca > 1:1253876/1‑66 (MQ=255)
caATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCTTCGgagagca > 1:1282977/1‑66 (MQ=255)
caATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCTTCGgagagca > 1:1585015/1‑66 (MQ=255)
caATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCTTCGgagagca > 1:1337889/1‑66 (MQ=255)
caATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCTTCGgagagca > 1:1380952/1‑66 (MQ=255)
caATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCTTCGgagagca > 1:138728/1‑66 (MQ=255)
caATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCTTCGgagagca > 1:1412536/1‑66 (MQ=255)
caATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCTTCGgagagca > 1:1423813/1‑66 (MQ=255)
caATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCTTCGgagagca > 1:1428847/1‑66 (MQ=255)
caATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCTTCGgagagca > 1:1430315/1‑66 (MQ=255)
caATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCTTCGgagagca > 1:1478117/1‑66 (MQ=255)
caATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCTTCGgagagca > 1:151223/1‑66 (MQ=255)
caATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCTTCGgagagca > 1:1580877/1‑66 (MQ=255)
caATCTGTTTATTGAGTTGACTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCTTCGgagagca > 1:551193/1‑66 (MQ=255)
|
CAATCTGTTTATTGAGTTGATTGAGCGTGTTTTGCGTTTCGCGCAGCTTACGGGTGGCTTCAGAGATCG > W3110S.gb/3853291‑3853359
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
