Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I0 R1
|
4577 |
57.4 |
3436498 |
77.7% |
2670158 |
63.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
303,058 |
G→A |
32.0% |
D191D (GAC→GAT) |
tesB ← |
acyl‑CoA thioesterase II |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 303,058 | 0 | G | A | 32.0%
| 74.3
/ 40.1
| 84 | D191D (GAC→GAT) | tesB | acyl‑CoA thioesterase II |
| Reads supporting (aligned to +/- strand): ref base G (24/33); new base A (12/15); total (36/48) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CAGGAAGTTAAGATCAGAAGCGTAACCGAGCAGATACTGATGAACGCGCAGGTCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGATGTGGTTCTGCGACGTGAC > minE/303007‑303119
|
cAGGAAGTTAAGATCAGAAGCGTAACCGAGCAGATACTGATGAACGCGCAGGTCATCCGGCACGCTAcc < 1:2867206/69‑1 (MQ=255)
tAAGATCAGAAGCGTAACCGAGCAGATACTGATGAACGCGCAGGTCATCCGGCACGCTACCATTTgcg > 1:968107/1‑68 (MQ=255)
tAAGATCAGAAGCGTAACCGAGCAGATACTGATGAACGCGCAGGTCATCCGGCACGCTACCATTTgcg > 1:861970/1‑68 (MQ=255)
tAAGATCAGAAGCGTAACCGAGCAGATACTGATGAACGCGCAGGTCATCCGGCACGCTACCATTTgcg > 1:491556/1‑68 (MQ=255)
tAAGATCAGAAGCGTAACCGAGCAGATACTGATGAACGCGCAGGTCATCCGGCACGCTACCATTTgcg > 1:419406/1‑68 (MQ=255)
tAAGATCAGAAGCGTAACCGAGCAGATACTGATGAACGCGCAGGTCATCCGGCACGCTACCATTTgcg > 1:369033/1‑68 (MQ=255)
tAAGATCAGAAGCGTAACCGAGCAGATACTGATGAACGCGCAGGTCATCCGGCACGCTACCATTTgcg > 1:3228233/1‑68 (MQ=255)
tAAGATCAGAAGCGTAACCGAGCAGATACTGATGAACGCGCAGGTCATCCGGCACGCTACCATTTgcg > 1:1792018/1‑68 (MQ=255)
tAAGATCAGAAGCGTAACCGAGCAGATACTGATGAACGCGCAGGTCATCCGGCACGCTACCATTTgcg > 1:2088219/1‑68 (MQ=255)
tAAGATCAGAAGCGTAACCGAGCAGATACTGATGAACGCGCAGGTCATCCGGCACGCTACCATTTgcg > 1:2696236/1‑68 (MQ=255)
tAAGATCAGAAGCGTAACCGAGCAGATACTGATGAACGCGCAGGTCATCCGGCACGCTACCATTTgcg > 1:1506718/1‑68 (MQ=255)
tAAGATCAGAAGCGTAACCGAGCAGATACTGATGAACGCGCAGGTCATCCGGCACGCTACCATTTgcg > 1:2280196/1‑68 (MQ=255)
gCAGATACTGATGAACGCGCAGATCATCCGGCACGCTACCAt > 1:746174/1‑42 (MQ=255)
gCAGATACTGATGAACGCGCAGATCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGAtgcg > 1:2035747/1‑67 (MQ=255)
gCAGATACTGATGAACGCGCAGATCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGAtgcg > 1:1093473/1‑67 (MQ=255)
gCAGATACTGATGAACGCGCAGATCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGAtgcg > 1:2185183/1‑67 (MQ=255)
gCAGATACTGATGAACGCGCAGATCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGAtgcg > 1:2402553/1‑67 (MQ=255)
gCAGATACTGATGAACGCGCAGATCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGAtgcg > 1:2540670/1‑67 (MQ=255)
gCAGATACTGATGAACGCGCAGATCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGAtgcg > 1:2993874/1‑67 (MQ=255)
gCAGATACTGATGAACGCGCAGATCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGAtgcg > 1:3118205/1‑67 (MQ=255)
gCAGATACTGATGAACGCGCAGATCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGAtgcg > 1:3237213/1‑67 (MQ=255)
gCAGATACTGATGAACGCGCAGATCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGAtgcg > 1:1101636/1‑67 (MQ=255)
gCAGATACTGATGAACGCGCAGATCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGAtgcg > 1:1420078/1‑67 (MQ=255)
gCAGATACTGATGAACGCGCAGATCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGAtgcg > 1:1622812/1‑67 (MQ=255)
aGATACTGATGAACGCGCAGGTCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGATGTGGt < 1:2942130/69‑1 (MQ=255)
aGATACTGATGAACGCGCAGGTCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGATGTGGt < 1:1068201/69‑1 (MQ=255)
aGATACTGATGAACGCGCAGGTCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGATGTGGt < 1:1112356/69‑1 (MQ=255)
aGATACTGATGAACGCGCAGGTCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGATGTGGt < 1:3147161/69‑1 (MQ=255)
aGATACTGATGAACGCGCAGGTCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGATGTGGt < 1:2945936/69‑1 (MQ=255)
aGATACTGATGAACGCGCAGGTCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGATGTGGt < 1:2906028/69‑1 (MQ=255)
aGATACTGATGAACGCGCAGGTCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGATGTGGt < 1:2713862/69‑1 (MQ=255)
aGATACTGATGAACGCGCAGGTCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGATGTGGt < 1:2177785/69‑1 (MQ=255)
aCTGATGAACGCGCAGGTCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGATGTGGTTCt > 1:2223021/1‑68 (MQ=255)
aCTGATGAACGCGCAGGTCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGATGTGGTTCt > 1:1119662/1‑68 (MQ=255)
aCTGATGAACGCGCAGGTCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGATGTGGTTCt > 1:1240142/1‑68 (MQ=255)
aCTGATGAACGCGCAGGTCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGATGTGGTTCt > 1:3105058/1‑68 (MQ=255)
aCTGATGAACGCGCAGGTCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGATGTGGTTCt > 1:2878620/1‑68 (MQ=255)
aCTGATGAACGCGCAGGTCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGATGTGGTTCt > 1:2061708/1‑68 (MQ=255)
aCTGATGAACGCGCAGGTCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGATGTGGTTCt > 1:150081/1‑68 (MQ=255)
aCTGATGAACGCGCAGGTCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGATGTGGTTCt > 1:2606718/1‑68 (MQ=255)
aCTGATGAACGCGCAGGTCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGATGTGGTTCt > 1:2631960/1‑68 (MQ=255)
aCTGATGAACGCGCAGGTCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGATGTGGTTCt > 1:949379/1‑68 (MQ=255)
gaACGCGCAGGTCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGATGTGGTTCTGCTACGt < 1:2720363/69‑1 (MQ=255)
gaACGCGCAGGTCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGATGTGGTTCTGCGACGt < 1:894715/69‑1 (MQ=255)
gaACGCGCAGGTCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGATGTGGTTCTGCGACGt < 1:367495/69‑1 (MQ=255)
gaACGCGCAGGTCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGATGTGGTTCTGCGACGt < 1:433660/69‑1 (MQ=255)
gaACGCGCAGGTCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGATGTGGTTCTGCGACGt < 1:2137572/69‑1 (MQ=255)
gaACGCGCAGATCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGATGCGGTTCTGCGACGt < 1:1130791/69‑1 (MQ=255)
gaACGCGCAGATCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGATGCGGTTCTGCGACGt < 1:1662781/69‑1 (MQ=255)
gaACGCGCAGATCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGATGCGGTTCTGCGACGt < 1:43773/69‑1 (MQ=255)
gaACGCGCAGATCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGATGCGGTTCTGCGACGt < 1:94334/69‑1 (MQ=255)
gaACGCGCAGATCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGATGCGGTTCTGCGACGt < 1:61664/69‑1 (MQ=255)
gaACGCGCAGATCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGATGCGGTTCTGCGACGt < 1:2920777/69‑1 (MQ=255)
gaACGCGCAGATCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGATGCGGTTCTGCGACGt < 1:220760/69‑1 (MQ=255)
gaACGCGCAGATCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGATGCGGTTCTGCGACGt < 1:2408064/69‑1 (MQ=255)
gaACGCGCAGATCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGATGCGGTTCTGCGACGt < 1:2760041/69‑1 (MQ=255)
gaACGCGCAGATCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGATGCGGTTCTGCGACGt < 1:2754100/69‑1 (MQ=255)
aaCGCGCAGGTCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGATGTGGTTCTGCGACGTg < 1:496739/69‑1 (MQ=255)
aaCGCGCAGGTCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGATGTGGTTCTGCGACGTg < 1:1115361/69‑1 (MQ=255)
aaCGCGCAGGTCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGATGTGGTTCTGCGACGTg < 1:771355/69‑1 (MQ=255)
aaCGCGCAGGTCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGATGTGGTTCTGCGACGTg < 1:483842/69‑1 (MQ=255)
aaCGCGCAGGTCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGATGTGGTTCTGCGACGTg < 1:836672/69‑1 (MQ=255)
aaCGCGCAGGTCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGATGTGGTTCTGCGACGTg > 1:858129/1‑69 (MQ=255)
aaCGCGCAGGTCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGATGTGGTTCTGCGACGTg < 1:2232916/69‑1 (MQ=255)
aaCGCGCAGGTCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGATGTGGTTCTGCGACGTg < 1:884585/69‑1 (MQ=255)
aaCGCGCAGGTCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGATGTGGTTCTGCGACGTg < 1:1415039/69‑1 (MQ=255)
aaCGCGCAGGTCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGATGTGGTTCTGCGACGTg < 1:2293220/69‑1 (MQ=255)
aaCGCGCAGGTCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGATGTGGTTCTGCGACGTg > 1:2948861/1‑69 (MQ=255)
aaCGCGCAGGTCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGATGTGGTTCTGCGACGTg > 1:1708104/1‑69 (MQ=255)
aaCGCGCAGGTCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGATGTGGTTCTGCGACGTg < 1:189847/69‑1 (MQ=255)
aaCGCGCAGGTCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGATGTGGTTCTGCGACGTg < 1:2911532/69‑1 (MQ=255)
aaCGCGCAGGTCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGATGTGGTTCTGCGACGTg < 1:1470764/69‑1 (MQ=255)
aaCGCGCAGGTCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGATGTGGTTCTGCGACGTg < 1:2737515/69‑1 (MQ=255)
aaCGCGCAGGTCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGATGTGGTTCTGCGACGTg < 1:2213932/69‑1 (MQ=255)
aaCGCGCAGATCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGATGCGGTTCTGCGACGt < 1:3316344/68‑1 (MQ=255)
aaCGCGCAGATCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGATGCGGTTCTGCGACGt < 1:806696/68‑1 (MQ=255)
cgcgCAGGTCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGATGTGGTTCTGCGACGTGAc < 1:1882526/69‑1 (MQ=255)
cgcgCAGGTCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGATGTGGTTCTGCGACGTGAc < 1:1624051/69‑1 (MQ=255)
cgcgCAGGTCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGATGTGGTTCTGCGACGTGAc < 1:903075/69‑1 (MQ=255)
cgcgCAGGTCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGATGTGGTTCTGCGACGTGAc < 1:1735277/69‑1 (MQ=255)
cgcgCAGGTCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGATGTGGTTCTGCGACGTGAc < 1:2998196/69‑1 (MQ=255)
cgcgCAGATCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGATGCGGTTCTGCGACGTgcc < 1:2212479/69‑3 (MQ=255)
cgcgCAGATCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGATGCGGTTCTGCGACGTgcc < 1:2801069/69‑3 (MQ=255)
cgcgCAGATCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGATGCGGTTCTGCGACGTgcc < 1:1361838/69‑3 (MQ=255)
|
CAGGAAGTTAAGATCAGAAGCGTAACCGAGCAGATACTGATGAACGCGCAGGTCATCCGGCACGCTACCATTTGCGCGGATCCACACCTGACGATGTGGTTCTGCGACGTGAC > minE/303007‑303119
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
