Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I0 R1
|
4577 |
57.4 |
3436498 |
77.7% |
2670158 |
63.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
323,098 |
G→A |
44.3% |
P75P (CCG→CCA) |
recR → |
gap repair protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 323,098 | 0 | G | A | 44.3%
| 23.8
/ 76.7
| 97 | P75P (CCG→CCA) | recR | gap repair protein |
| Reads supporting (aligned to +/- strand): ref base G (46/8); new base A (26/17); total (72/25) |
| Fisher's exact test for biased strand distribution p-value = 9.42e-03 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
AATCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAACGGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAG > minE/323032‑323161
|
aaTCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCcgcg > 1:1647409/1‑69 (MQ=255)
aaTCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCcgcg > 1:2336350/1‑69 (MQ=255)
aTCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGcgt > 1:1268045/1‑69 (MQ=255)
aTCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGcgt > 1:3085766/1‑69 (MQ=255)
aTCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGcgt > 1:144082/1‑69 (MQ=255)
ggCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGCATCCGcgtc > 1:540613/1‑67 (MQ=255)
ggCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGcgtc > 1:1556856/1‑67 (MQ=255)
ggCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGcgtc > 1:423658/1‑67 (MQ=255)
tGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGaa > 1:2170168/1‑69 (MQ=255)
tGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGaa > 1:1749729/1‑69 (MQ=255)
tGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGaa > 1:1934123/1‑69 (MQ=255)
tGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGaa > 1:3244092/1‑69 (MQ=255)
tGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGaa > 1:2004677/1‑69 (MQ=255)
tGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGaa > 1:908049/1‑69 (MQ=255)
tGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGaa > 1:2112311/1‑69 (MQ=255)
tGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGaa > 1:2126063/1‑69 (MQ=255)
tGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGaa > 1:2137161/1‑69 (MQ=255)
tGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGaa > 1:1046638/1‑69 (MQ=255)
tGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGaa > 1:2407004/1‑69 (MQ=255)
tGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGaa > 1:2426917/1‑69 (MQ=255)
tGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGaa > 1:300628/1‑69 (MQ=255)
tGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGaa > 1:2451225/1‑69 (MQ=255)
tGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGaa > 1:698221/1‑69 (MQ=255)
tGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGaa > 1:2516222/1‑69 (MQ=255)
tGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGaa > 1:270141/1‑69 (MQ=255)
tGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGaa > 1:929104/1‑69 (MQ=255)
tGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGaa > 1:1441330/1‑69 (MQ=255)
tGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGaa > 1:3351151/1‑69 (MQ=255)
tGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGaa > 1:3421847/1‑69 (MQ=255)
tGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGaa > 1:150686/1‑69 (MQ=255)
tGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGa > 1:914585/1‑68 (MQ=255)
tGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGa > 1:1942875/1‑68 (MQ=255)
tGCGCCGATTGCCGCACCTTCACAGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGaa > 1:3421598/1‑69 (MQ=255)
tGCGCAGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGaa > 1:1035268/1‑69 (MQ=255)
gcgcCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGaaaa > 1:1506418/1‑69 (MQ=255)
gcgcCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGaaaa > 1:2404698/1‑69 (MQ=255)
gcgcCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGaaaa > 1:2112757/1‑69 (MQ=255)
gcgcCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGaaaa > 1:1462308/1‑69 (MQ=255)
gcgcCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGaaaa > 1:3109941/1‑69 (MQ=255)
gCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAACGGTCaaa < 1:2187560/69‑1 (MQ=255)
gCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAACGGTCaaa < 1:2627081/69‑1 (MQ=255)
gCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAACGGTCaaa > 1:134769/1‑69 (MQ=255)
gCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAACGGTCaaa > 1:1566551/1‑69 (MQ=255)
ttCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCcgc > 1:3284284/1‑40 (MQ=255)
ttCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAACGGTCAAATCTGCgtg > 1:847856/1‑69 (MQ=255)
ttCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAACGGTCAAATCTGCgtg > 1:2678981/1‑69 (MQ=255)
ttCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAACGGTCAAATCTGCgtg > 1:1864593/1‑69 (MQ=255)
ttCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAACGGTCAAATCTGCgtg > 1:399183/1‑69 (MQ=255)
ttCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAACGGTCAAATCTGCgtg > 1:1466860/1‑69 (MQ=255)
ttCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAACGGTCAAATCTGCgtg > 1:2269961/1‑69 (MQ=255)
ttCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAACGGTCAAATCTGCgtg > 1:2112763/1‑69 (MQ=255)
ttCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAACGGTCAAATCTGCgt > 1:3235823/1‑68 (MQ=255)
ccGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAACGGTCAAATCTGCgtggtg < 1:1258855/68‑1 (MQ=255)
ccGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAACGGTCAAATCTGCgtggtg < 1:1477318/68‑1 (MQ=255)
aCAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAACGGTCAAATCTGCGTGGTGGagag < 1:3340012/69‑1 (MQ=255)
aCAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAACGGTCAAATCTGCGTGGTGGagag < 1:355832/69‑1 (MQ=255)
aCAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAACGGTCAAATCTGCGTGGTGGagag < 1:648024/69‑1 (MQ=255)
aCAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAACGGTCAAATCTGCGTGGTGGagag < 1:376987/69‑1 (MQ=255)
aCAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAACGGTCAAATCTGCGTGGTGGagag < 1:3010228/69‑1 (MQ=255)
aCAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAACGGTCAAATCTGCGTGGTGGagag < 1:682372/69‑1 (MQ=255)
aCAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAACGGTCAAATCTGCGTGGTGGagag < 1:1211619/69‑1 (MQ=255)
aCAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAACGGTCAAATCTGCGTGGTGGagag < 1:964626/69‑1 (MQ=255)
aCAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAACGGTCAAATCTGCGTGGTGGagag < 1:961734/69‑1 (MQ=255)
aCAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAACGGTCAAATCTGCGTGGTGGagag < 1:2185361/69‑1 (MQ=255)
aCAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAACGGTCAAATCTGCGTGGTGGagag < 1:2146028/69‑1 (MQ=255)
aCAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAACGGTCAAATCTGCGTGGTGGagag < 1:2079518/69‑1 (MQ=255)
aCAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAACGGTCAAATCTGCGTGGTGGagag < 1:1946894/69‑1 (MQ=255)
aCAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAACGGTCAAATCTGCGTGGTGGagag < 1:912258/69‑1 (MQ=255)
aCAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAACGGTCAAATCTGCGTGGTGGagag < 1:1638393/69‑1 (MQ=255)
aCAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAACGGTCAAATCTGCGTGGTGGagag < 1:958347/69‑1 (MQ=255)
aCAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAACGGTCAAATCAGCGTGGTGGagag < 1:2435983/69‑1 (MQ=255)
cTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAACGGTCAAATCTGCGTGGTGGAGAGTCcggcgg > 1:118610/1‑68 (MQ=255)
cTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAACGGTCAAATCTGCGTGGTGGAGAGTCCGGCGGa > 1:2541465/1‑69 (MQ=255)
cTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAACGGTCAAATCTGCGTGGTGGAGAGTCCGGCGGa > 1:1510425/1‑69 (MQ=255)
cTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAACGGTCAAATCTGCGTGGTGGAGAGTCCGGCGGa > 1:85470/1‑69 (MQ=255)
cTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAACGGTCAAATCTGCGTGGTGGAGAGTCCGGCGGa > 1:299692/1‑69 (MQ=255)
cTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAACGGTCAAATCTGCGTGGTGGAGAGTCCGGCGGa > 1:2862224/1‑69 (MQ=255)
tGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAACGGTCaa > 1:620384/1‑42 (MQ=255)
tGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAACGGTCaa > 1:996078/1‑42 (MQ=255)
tGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAACGGTCaa > 1:997027/1‑42 (MQ=255)
tGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAACGGTCaa > 1:3405177/1‑42 (MQ=255)
tGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAACGGTCaa > 1:120304/1‑42 (MQ=255)
tGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAACGGTCaa > 1:3274394/1‑42 (MQ=255)
tGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAACGGTCaa > 1:2898526/1‑42 (MQ=255)
tGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAACGGTCaa > 1:1241978/1‑42 (MQ=255)
tGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAACGGTCaa > 1:2471727/1‑42 (MQ=255)
tGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAACGGTCaa > 1:1571520/1‑42 (MQ=255)
tGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAACGGTCaa > 1:364551/1‑42 (MQ=255)
tGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAACGGTCaa > 1:1798106/1‑42 (MQ=255)
tGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAACGGTCa > 1:1389478/1‑41 (MQ=255)
tGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAACGGTCAAATCTGCGTGGTGga > 1:2236085/1‑56 (MQ=255)
tGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAACGGTCAAATCTGCGTGGTGga < 1:1183469/56‑1 (MQ=255)
tGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAACGGTCAAATCTGCGTGGTGga > 1:2074268/1‑56 (MQ=255)
tGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAACGGTCAAATCTGCGTGGTGga < 1:411714/56‑1 (MQ=255)
tGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAACGGTCAAATCTGCGTGGTGGAGAGTCCGGCGGAc < 1:2817191/69‑1 (MQ=255)
aTCTGTTCGAATCCGCGTCGTCAGGAAAACGGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTAc > 1:2434067/1‑69 (MQ=255)
aTCTGTTCGAATCCGCGTCGTCAGGAAAACGGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTAc > 1:2613790/1‑69 (MQ=255)
aTCTGTTCGAATCCGCGTCGTCAGGAAAACGGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTAc > 1:469566/1‑69 (MQ=255)
tGTTCGAATCCGCGTCGTCAGGAAAACGGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGcc > 1:1236847/1‑69 (MQ=255)
aTCCGCGGCGTCAGGAAAACGGTCAAATTTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAg < 1:1275595/68‑1 (MQ=255)
|
AATCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAACGGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAG > minE/323032‑323161
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
