Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I0 R1
|
4577 |
57.4 |
3436498 |
77.7% |
2670158 |
63.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
503,377 |
C→T |
40.2% |
D123D (GAC→GAT) |
modC → |
molybdate transporter subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 503,377 | 0 | C | T | 40.2%
| 26.6
/ 40.7
| 62 | D123D (GAC→GAT) | modC | molybdate transporter subunit |
| Reads supporting (aligned to +/- strand): ref base C (30/7); new base T (20/5); total (50/12) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TGTCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGACCGTTTACCAGGCAGCCTGTCCGGAGGCGAAAAACAGCGCGTGGCGATTGGTCGGGCTTTGCTGACAGC > minE/503310‑503445
|
tGTCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGAcc > 1:960578/1‑69 (MQ=255)
tGTCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGAcc > 1:1730368/1‑69 (MQ=255)
tGTCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGAcc > 1:1480831/1‑69 (MQ=255)
tCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGACCg > 1:3089367/1‑68 (MQ=255)
tCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGACCg > 1:2890937/1‑68 (MQ=255)
tCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGACCg > 1:3357491/1‑68 (MQ=255)
tCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGACCg > 1:2688468/1‑68 (MQ=255)
tCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGACCg > 1:2659078/1‑68 (MQ=255)
tCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGACCg > 1:1013049/1‑68 (MQ=255)
tCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGACCg > 1:351790/1‑68 (MQ=255)
tCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGACCg > 1:398647/1‑68 (MQ=255)
tCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGACCg > 1:3179181/1‑68 (MQ=255)
tCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGACCg > 1:2110851/1‑68 (MQ=255)
tCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGACCg > 1:403689/1‑68 (MQ=255)
tCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGACCg > 1:556696/1‑68 (MQ=255)
tCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGACCg > 1:1894357/1‑68 (MQ=255)
tCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGACCg > 1:1803388/1‑68 (MQ=255)
tCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGACCg > 1:2033319/1‑68 (MQ=255)
tCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGACCg > 1:778866/1‑68 (MQ=255)
tCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGACCg > 1:1797770/1‑68 (MQ=255)
tCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGACCg > 1:1350225/1‑68 (MQ=255)
tCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGACCg > 1:657882/1‑68 (MQ=255)
gTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGACGGTTTACCAGGCAGc > 1:1608448/1‑69 (MQ=255)
gTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGACCGTTTACCAGGCAg < 1:1407640/68‑1 (MQ=255)
gTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGACCGTTTACCAGGCAg < 1:1589267/68‑1 (MQ=255)
cAGTTCGATAAGCTGGTGGCGCTTTTAGGTATTGAACCGTTGCTTGATCGTTTACCAGGCAGCCTGTc > 1:2235254/1‑68 (MQ=255)
cAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGATCGTTTACCAGGCAGCCTg > 1:1687571/1‑66 (MQ=255)
cAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGATCGTTTACCAGGCAGCCTGTc > 1:3295457/1‑68 (MQ=255)
cAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGATCGTTTACCAGGCAGCCTGTc > 1:3176598/1‑68 (MQ=255)
cAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGATCGTTTACCAGGCAGCCTGTc > 1:3286337/1‑68 (MQ=255)
cAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGATCGTTTACCAGGCAGCCTGTc > 1:1154109/1‑68 (MQ=255)
cAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGATCGTTTACCAGGCAGCCTGTc > 1:91326/1‑68 (MQ=255)
cAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGATCGTTTACCAGGCAGCCTGTc > 1:3353645/1‑68 (MQ=255)
cAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGATCGTTTACCAGGCAGCCTGTc > 1:887635/1‑68 (MQ=255)
cAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGATCGTTTACCAGGCAGCCTGTc > 1:1022398/1‑68 (MQ=255)
cAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGATCGTTTACCAGGCAGCCTGTc > 1:341047/1‑68 (MQ=255)
cAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGATCGTTTACCAGGCAGCCTGTc > 1:808043/1‑68 (MQ=255)
cAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGATCGTTTACCAGGCAGCCTGTc > 1:3412462/1‑68 (MQ=255)
cAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGATCGTTTACCAGGCAGCCTGTc > 1:3416448/1‑68 (MQ=255)
cAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGATCGTTTACCAGGCAGCCTGTc > 1:2422189/1‑68 (MQ=255)
cAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGATCGTTTACCAGGCAGCCTGTc > 1:2228065/1‑68 (MQ=255)
cAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGATCGTTTACCAGGCAGCCTGTc > 1:1576391/1‑68 (MQ=255)
cAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGATCGTTTACCAGGCAGCCTGTc > 1:1947547/1‑68 (MQ=255)
cAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGATCGTTTACCAGGCAGCCTGTc > 1:1672224/1‑68 (MQ=255)
cAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGACCGTTTACCAGGCAGCCTGt > 1:2740620/1‑67 (MQ=255)
cAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTAAACCGTTGCTTGATCGTTTACCAGGCAGCCTGTc > 1:2538125/1‑68 (MQ=255)
cTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGACCGTTTACCAGGCAGCCTGTCCGGAGGCGaaaa < 1:260573/68‑1 (MQ=255)
tttAGGCATTGAACCGTTGCTTGACCGTTTACCAGGCAGCCTGTCCGGAGGCGAAAAACAGCGCGTGGc < 1:2735593/69‑1 (MQ=255)
tAGGCATTGAACCGTTGCTTGACCGTTTACCAGGCAGCCTGTCCGGAGGCGAAAAACAGCGCGTGGc < 1:2036277/67‑1 (MQ=255)
gAACCGTTGCTTGACCGTTTACCAGGCAGCCTGTCCGGAGGCGAAAAACAGCGCGTGGCGa > 1:3159544/1‑61 (MQ=255)
gAACCGTTGCTTGACCGTTTACCAGGCAGCCTGTCCGGAGGCGAAAAACAGCGCGTGGCGATTGGTCgg > 1:424841/1‑69 (MQ=255)
gAACCGTTGCTTGACCGTTTACCAGGCAGCCTGTCCGGAGGCGAAAAACAGCGCGTGGCGATTGGTCgg > 1:1021312/1‑69 (MQ=255)
gAACCGTTGCTTGACCGTTTACCAGGCAGCCTGTCCGGAGGCGAAAAACAGCGCGTGGCGATTGGTCgg > 1:1261038/1‑69 (MQ=255)
gAACCGTTGCTTGACCGTTTACCAGGCAGCCTGTCCGGAGGCGAAAAACAGCGCGTGGCGATTGGTCgg > 1:2029489/1‑69 (MQ=255)
gAACCGTTGCTTGACCGTTTACCAGGCAGCCTGTCCGGAGGCGAAAAACAGCGCGTGGCGATTGGTCgg > 1:2178564/1‑69 (MQ=255)
gAACCGTTGCTTGACCGTTTACCAGGCAGCCTGTCCGGAGGCGAAAAACAGCGCGTGGCGATTGGTCgg > 1:2538058/1‑69 (MQ=255)
gAACCGTTGCATAACCGTTTACCAGGCAGCCTGTCCGGAGGCGAAAAACAGCGCGTGGCGATTGGTCgg > 1:876026/1‑69 (MQ=255)
gTTGCTTGACCGTTTACCAGGCAGCCTGTCCGGAGGCGAAAAACAGCGCGTGGCGATTGGTCGGGCttt > 1:1292704/1‑69 (MQ=255)
tGATCGTTTACCAGGCAGCCTGTCCGGAGGCGAAAAACAGCGCGTGGCGATTGGTCGGGCTTTGCTGAc < 1:2614489/69‑1 (MQ=255)
tGATCGTTTACCAGGCAGCCTGTCCGGAGGCGAAAAACAGCGCGTGGCGATTGGTCGGGCTTTGCTGAc < 1:76776/69‑1 (MQ=255)
tGATCGTTTACCAGGCAGCCTGTCCGGAGGCGAAAAACAGCGCGTGGCGATTGGTCGGGCTTTGCTGAc < 1:1346596/69‑1 (MQ=255)
tGATCGTTTACCAGGCAGCCTGTCCGGAGGCGAAAAACAGCGCGTGGCGATTGGTCGGGCTTTGCTGAc < 1:1178163/69‑1 (MQ=255)
tGATCGTTTACCAGGCAGCCTGTCCGGAGGCGAAAAACAGCGCGTGGCGATTGGTCGGGCTTTGCTGAc < 1:2752769/69‑1 (MQ=255)
tGACCGTTTACCAGGCAGCCTGTCCGGAGGCGAAAAACAGCGCGTGGCGATTGGTCGGGCTTTGCTGAc < 1:2693024/69‑1 (MQ=255)
tGACCGTTTACCAGGAAGCCTGTCCGGAGGCGATAAACAGCGCGTGGCGATTGGTCGGGCTTTGCTGAc < 1:1452780/69‑1 (MQ=255)
ccGTTTACCAGGCAGCCTGTCCGGAGGCGAAAAACAGCGCGTGGCGATT‑GTCGGGCTTTGCTGACAGc < 1:2133763/68‑1 (MQ=255)
|
TGTCGAAAAGTATGGTCGATCAGTTCGATAAGCTGGTGGCGCTTTTAGGCATTGAACCGTTGCTTGACCGTTTACCAGGCAGCCTGTCCGGAGGCGAAAAACAGCGCGTGGCGATTGGTCGGGCTTTGCTGACAGC > minE/503310‑503445
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
