Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I0 R1
|
4577 |
57.4 |
3436498 |
77.7% |
2670158 |
63.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
526,896 |
G→T |
55.9% |
T186T (ACG→ACT) |
ybhL → |
predicted inner membrane protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 526,896 | 0 | G | T | 55.9%
| 8.0
/ 60.7
| 59 | T186T (ACG→ACT) | ybhL | predicted inner membrane protein |
| Reads supporting (aligned to +/- strand): ref base G (7/19); new base T (7/26); total (14/45) |
| Fisher's exact test for biased strand distribution p-value = 7.60e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GATGTGGGCAGTTACCTACATCGGCGTGATTGTCTTTGTCGGATTGACGGCGTATGACACGCAGAAACTGAAAAATATGGGTGAGCAGATTGATACCCGCGACACGTCGAACCTGCGCA > minE/526836‑526954
|
gATGTGGGCAGTTACCTACATCGGCGTGATTGTCTTTGTCGGATTGACGGCGTATGACACGCAGaaa > 1:1920924/1‑67 (MQ=255)
gATGTGGGCAGTTACCTACATCGGCGTGATTGTCTTTGTCGGATTGACGGCGTATGACACGCAGAAAc > 1:2864460/1‑68 (MQ=255)
gATGTGGGCAGTTACCTACATCGGCGTGATTGTCTTTGTCGGATTGACGGCGTATGACACGCAGAAAc > 1:1744631/1‑68 (MQ=255)
ggCAGTTACCTACATCGGCGTGATTGTCTTTGTCGGATTGACGGCGTATGACACGCAGAAACTGaaaaa < 1:2817405/69‑1 (MQ=255)
ggCAGTTACCTACATCGGCGTGATTGTCTTTGTCGGATTGACGGCGTATGACACGCAGAAACTGaaaaa < 1:2689522/69‑1 (MQ=255)
ggCAGTTACCTACATCGGCGTGATTGTCTTTGTCGGATTGACGGCGTATGACACGCAGAAACTGaaaaa < 1:2924665/69‑1 (MQ=255)
ggCAGTTACCTACATCGGCGTGATTGTCTTTGTCGGATTGACGGCGTATGACACGCAGAAACTGaaaaa < 1:2115454/69‑1 (MQ=255)
ggCAGTTACCTACATCGGCGTGATTGTCTTTGTCGGATTGACGGCGTATGACACGCAGAAACTGaaaaa < 1:765075/69‑1 (MQ=255)
ggCAGTTACCTACATCGGCGTGATTGTCTTTGTCGGATTGACGGCGTATGACACGCAGAAACTGaaaaa < 1:94883/69‑1 (MQ=255)
cAGTTACCTACATCGGCGTGATTGTCTTTGTCGGATTGACGGCGTATGACACTCAGAAATTGAAAAat < 1:1394709/68‑1 (MQ=255)
cAGTTACCTACATCGGCGTGATTGTCTTTGTCGGATTGACGGCGTATGACACTCAGAAATTGAAAAat < 1:2759885/68‑1 (MQ=255)
cAGTTACCTACATCGGCGTGATTGTCTTTGTCGGATTGACGGCGTATGACACTCAGAAATTGAAAAat < 1:275258/68‑1 (MQ=255)
cAGTTACCTACATCGGCGTGATTGTCTTTGTCGGATTGACGGCGTATGACACTCAGAAATTGAAAAat < 1:1140355/68‑1 (MQ=255)
cAGTTACCTACATCGGCGTGATTGTCTTTGTCGGATTGACGGCGTATGACACTCAGAAATTGAAAAat < 1:1082280/68‑1 (MQ=255)
cAGTTACCTACATCGGCGTGATTGTCTTTGTCGGATTGACGGCGTATGACACTCAGAAATTGAAAAat < 1:1159392/68‑1 (MQ=255)
cAGTTACCTACATCGGCGTGATTGTCTTTGTCGGATTGACGGCGTATGACACTCAGAAATTGAAAAat < 1:2930796/68‑1 (MQ=255)
cAGTTACCTACATCGGCGTGATTGTCTTTGTCGGATTGACGGCGTATGACACTCAGAAATTGAAAAat < 1:2562419/68‑1 (MQ=255)
cAGTTACCTACATCGGCGTGATTGTCTTTGTCGGATTGACGGCGTATGACACTCAGAAATTGAAAAat < 1:2459988/68‑1 (MQ=255)
cAGTTACCTACATCGGCGTGATTGTCTTTGTCGGATTGACGGCGTATGACACTCAGAAATTGAAAAat < 1:2450352/68‑1 (MQ=255)
cAGTTACCTACATCGGCGTGATTGTCTTTGTCGGATTGACGGCGTATGACACTCAGAAATTGAAAAat < 1:3006320/68‑1 (MQ=255)
cAGTTACCTACATCGGCGTGATTGTCTTTGTCGGATTGACGGCGTATGACACTCAGAAATTGAAAAat < 1:3393211/68‑1 (MQ=255)
cAGTTACCTACATCGGCGTGATTGTCTTTGTCGGATTGACGGCGTATGACACTCAGAAATTGAAAAat < 1:1950469/68‑1 (MQ=255)
cAGTTACCTACATCGGCGTGATTGTCTTTGTCGGATTGACGGCGTATGACACTCAGAAATTGAAAAat < 1:1946423/68‑1 (MQ=255)
cAGTTACCTACATCGGCGTGATTGTCTTTGTCGGATTGACGGCGTATGACACTCAGAAATTGAAAAat < 1:804850/68‑1 (MQ=255)
cAGTTACCTACATCGGCGTGATTGTCTTTGTCGGATTGACGGCGTATGACACTCAGAAATTGAAAAat < 1:716178/68‑1 (MQ=255)
cAGTTACCTACATCGGCGTGATTGTCTTTGTCGGATTGACGGCGTATGACACTCAGAAATTGAAAAat < 1:1861131/68‑1 (MQ=255)
cAGTTACCTACATCGGCGTGATTGTCTTTGTCGGATTGACGGCGTATGACACTCAGAAATTGAAAAat < 1:1767530/68‑1 (MQ=255)
cAGTTACCTACATCGGCGTGATTGTCTTTGTCGGATTGACGGCGTATGACACTCAGAAATTGAAAAat < 1:1282643/68‑1 (MQ=255)
cAGTTACCTACATCGGCGTGATTGTCTTTGTCGGATTGACGGCGTATGACACTCAGAAATTGAAAAat < 1:1558315/68‑1 (MQ=255)
cAGTTACCTACATCGGCGTGATTGTCTTTGTCGGATTGACGGCGTATGACACTCAGAAATTGAAAAat < 1:1308402/68‑1 (MQ=255)
cAGTTACCTACATCGGCGTGATTGTCTTTGTCGGATTGACGGCGTATGACACTCAGAAATTGAAAAat < 1:147781/68‑1 (MQ=255)
aGTTACCTACATCTGCGTGATTGTCTTTGTCGGATTGACGGCGTATGACACTCAGAAATTGAAAAat < 1:1333427/67‑1 (MQ=255)
aGTTACCTACATCGGCGTGATTGTCTTTGTCGGATTGACGGCGTATGACACTCAGAAATTGAAAAat < 1:2322509/67‑1 (MQ=255)
aCCTACATCGGCGTGATTGTCTTTGTCGGATTGACGGCGTATGACACGCAGAAACTGAAAAatat > 1:2856838/1‑65 (MQ=255)
aCCTACATCGGCGTGATTGTCTTTGTCGGATTGACGGCGTATGACACGCAGAAACTGAAAAATATgg > 1:734837/1‑67 (MQ=255)
aCCTACATCGGCGTGATTGTCTTTGTCGGATTGACGGCGTATGACACGCAGAAACTGAAAAATATgg > 1:967635/1‑67 (MQ=255)
aCCTACATCGGCGTGATTGTCTTTGTCGGATTGACGGCGTATGACACGCAGAAACTGAAAAATATgg > 1:1163332/1‑67 (MQ=255)
tGTCTTTGTCGGATTGACGGCGTATGACACTCAGAAATTGAAAAat < 1:3021773/46‑1 (MQ=255)
gTCTTTGTCGGATTGACGGCGTATGACACGCAGAAACTGAAAAATATGGGTGAGCAGATTGATACCcgc < 1:1142792/69‑1 (MQ=255)
gTCTTTGTCGGATTGACGGCGTATGACACGCAGAAACTGAAAAATATGGGTGAGCAGATTGATACCcgc < 1:847750/69‑1 (MQ=255)
tCTTTGTCGGATTGACGGCGTATGACACGCAGAAACTGAAAAATATGGGTGAGCAGATTGATACCcgc < 1:3072082/68‑1 (MQ=255)
tGTCGGATTGACGGCGTATGACACTCAGAAATTGAAAAATATGGGTGAGCAGATTGATAccc > 1:2447382/1‑62 (MQ=255)
tGTCGGATTGACGGCGTATGACACTCAGAAATTGAAAAATATGGGTGAGCAGATTGATAccc > 1:3011769/1‑62 (MQ=255)
tGTCGGATTGACGGCGTATGACACTCAGAAATTGAAAAATATGGGTGAGCAGATTGATAccc > 1:3095085/1‑62 (MQ=255)
tGTCGGATTGACGGCGTATGACACTCAGAAATTGAAAAATATGGGTGAGCAGATTGATAccc > 1:1496092/1‑62 (MQ=255)
tGTCGGATTGACGGCGTATGACACTCAGAAATTGAAAAATATGGGTGAGCAGATTGATAccc > 1:1656880/1‑62 (MQ=255)
tGTCGGATTGACGGCGTATGACACTCAGAAATTGAAAAATATGGGTGAGCAGATTGATAccc > 1:2062889/1‑62 (MQ=255)
tGTCGGATTGACGGCGTATGACACTCAGAAATTGAAAAATATGGGTGAGCAGATTGATAccc > 1:359912/1‑62 (MQ=255)
tGTCGGATGGACGGCGTATGACACTCAGAAATTGAAAAat < 1:3062494/40‑1 (MQ=255)
aTTGACGGCGTATGACACGCAGAAACTGAAAAATATGGGTGAGCAGATTGATACCCGCGACACGTCGaa < 1:3096986/69‑1 (MQ=255)
aTTGACGGCGTATGACACGCAGAAACTGAAAAATATGGGTGAGCAGATTGATACCCGCGACACGTCGaa < 1:1261964/69‑1 (MQ=255)
aTTGACGGCGTATGACACGCAGAAACTGAAAAATATGGGTGAGCAGATTGATACCCGCGACACGTCGaa < 1:1893028/69‑1 (MQ=255)
aTTGACGGCGTATGACACGCAGAAACTGAAAAATATGGGTGAGCAGATTGATACCCGCGACACGTCGaa < 1:2765548/69‑1 (MQ=255)
aTTGACGGCGTATGACACGCAGAAACTGAAAAATATGGGTGAGCAGATTGATACCCGCGACACGTCGa < 1:2615663/68‑1 (MQ=255)
ttGACGGCGTATGACACGCAGAAACTGAAAAATATGGGTGAGCAGATTGATACCCGCGACACGTCGaa < 1:321709/68‑1 (MQ=255)
cGTATGACACGCAGAAACTGAAAAATATGGGTGAGCAGATTGATACCCGCGACACGTCGAACCTGCGCa < 1:3372808/69‑1 (MQ=255)
cGTATGACACGCAGAAACTGAAAAATATGGGTGAGCAGATTGATACCCGCGACACGTCGAACCTGCGCa < 1:2599867/69‑1 (MQ=255)
cGTATGACACGCAGAAACTGAAAAATATGGGTGAGCAGATTGATACCCGCGACACGTCGAACCTGCGCa < 1:2610239/69‑1 (MQ=255)
cGTATGACACGCAGAAACTGAAAAATATGGGTGAGCAGATTGATACCCGCGACACGTCGAACCTGCGCa < 1:2649658/69‑1 (MQ=255)
|
GATGTGGGCAGTTACCTACATCGGCGTGATTGTCTTTGTCGGATTGACGGCGTATGACACGCAGAAACTGAAAAATATGGGTGAGCAGATTGATACCCGCGACACGTCGAACCTGCGCA > minE/526836‑526954
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
