Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I0 R1
|
4577 |
57.4 |
3436498 |
77.7% |
2670158 |
63.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
668,013 |
C→T |
41.7% |
L451L (CTG→TTG) |
uup → |
fused predicted transporter subunits and ATP‑binding components of ABC superfamily |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 668,013 | 0 | C | T | 41.7%
| 35.8
/ 65.6
| 91 | L451L (CTG→TTG) | uup | fused predicted transporter subunits and ATP‑binding components of ABC superfamily |
| Reads supporting (aligned to +/- strand): ref base C (40/13); new base T (23/15); total (63/28) |
| Fisher's exact test for biased strand distribution p-value = 1.68e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CGAAACGGGCGATGACGCCGGTACGTGCGCTTTCTGGCGGTGAGCGGAACCGCTTGCTGCTGGCGCGTTTGTTCCTCAAACCAAGCAACTTATTGATTCTTGACGAACCG > minE/667954‑668063
|
cGAAACGGGCGATGACGCCGGTACGTGTGCTTTCTGGCGGTGAGCGGAACCGCTTGCTGCTGGCGCGtt > 1:1816284/1‑69 (MQ=255)
cGAAACGGGCGATGACGCCGGTACGTGCGCTTTCTGGCGGTGAGCGGAACCGCTTGCTGCTGGCGCGtt > 1:3228885/1‑69 (MQ=255)
cGAAACGGGCGATGACGCCGGTACGTGCGCTTTCTGGCGGTGAGCGGAACCGCTTGCTGCTGGCGCGtt > 1:809668/1‑69 (MQ=255)
cGAAACGGGCGATGACGCCGGTACGTGCGCTTTCTGGCGGTGAGCGGAACCGCTTGCTGCTGGCGCGtt > 1:1884976/1‑69 (MQ=255)
cGAAACGGGCGATGACGCCGGTACGTGCGCTTTCTGGCGGTGAGCGGAACCGCTTGCTGCTGGCGCGtt > 1:1905899/1‑69 (MQ=255)
cGAAACGGGCGATGACGCCGGTACGTGCGCTTTCTGGCGGTGAGCGGAACCGCTTGCTGCTGGCGCGtt > 1:2011128/1‑69 (MQ=255)
cGAAACGGGCGATGACGCCGGTACGTGCGCTTTCTGGCGGTGAGCGGAACCGCTTGCTGCTGGCGCGtt > 1:2068619/1‑69 (MQ=255)
cGAAACGGGCGATGACGCCGGTACGTGCGCTTTCTGGCGGTGAGCGGAACCGCTTGCTGCTGGCGCGtt > 1:1640776/1‑69 (MQ=255)
cGAAACGGGCGATGACGCCGGTACGTGCGCTTTCTGGCGGTGAGCGGAACCGCTTGCTGCTGGCGCGtt > 1:908714/1‑69 (MQ=255)
cGAAACGGGCGATGACGCCGGTACGTGCGCTTTCTGGCGGTGAGCGGAACCGCTTGCTGCTGGCGCGtt > 1:596916/1‑69 (MQ=255)
cGAAACGGGCGATGACGCCGGTACGTGCGCTTTCTGGCGGTGAGCGGAACCGCTTGCTGCTGGCGCGtt > 1:409665/1‑69 (MQ=255)
cGAAACGGGCGATGACGCCGGTACGTGCGCTTTCTGGCGGTGAGCGGAACCGCTTGCTGCTGGCGCGtt > 1:942505/1‑69 (MQ=255)
cGAAACGGGCGATGACGCCGGTACGTGCGCTTTCTGGCGGTGAGCGGAACCGCTTGCTGCTGGCGCGtt > 1:2779448/1‑69 (MQ=255)
cGAAACGGGCGATGACGCCGGTACGTGCGCTTTCTGGCGGTGAGCGGAACCGCTTGCTGCTGGCGCGtt > 1:946440/1‑69 (MQ=255)
cGAAACGGGCGATGACGCCGGTACGTGCGCTTTCTGGCGGTGAGCGGAACCGCTTGCTGCTGGCGCGtt > 1:2901904/1‑69 (MQ=255)
cGAAACGGGCGATGACGCCGGTACGTGCGCTTTCTGGCGGTGAGCGGAACCGCTTGCTGCTGGCGCGtt > 1:3374292/1‑69 (MQ=255)
cGAAACGGGCGATGACGCCGGTACGTGCGCTTTCTGGCGGTGAGCGGAACCGCTTGCTGCTGGCGCGtt > 1:3111976/1‑69 (MQ=255)
cGAAACGGGCGATGACGCCGGTACGTGCGCTTTCTGGCGGTGAGCGGAACCGCTTGCTGCTGGCGCGtt > 1:1076759/1‑69 (MQ=255)
cGAAACGGGCGATGACGCCGGTACGTGCGCTTTCTGGCGGTGAGCGGAACCGCTTGCTGCTGGCGCGt > 1:2633666/1‑68 (MQ=255)
cGAAACGGGCGATGACGCCGGTACGTGCGCTTTCTGGCGGTGAGCGGAACCGCTTGCTGCTGGCGCGt > 1:736808/1‑68 (MQ=255)
cGAAACGGGCGATGACGCCGGTACGTGCGCTTTCTGGCGGTGAGCGGAACCGCTTGCTGCTGGCGCGt > 1:1069390/1‑68 (MQ=255)
aaaCGGGCGATGACGCCGGTACGTGCGCTTTCTGGCGGTGAGCGGAACCGCTTGCTGCTGGCGCGTTTg < 1:1383038/69‑1 (MQ=255)
aaaCGGGCGATGACGCCGGTACGTGCGCTTTCTGGCGGTGAGCGGAACCGCTTGCTGCTGGCGCGTTTg < 1:1668388/69‑1 (MQ=255)
aaaCGGGCGATGACGCCGGTACGTGCGCTTTCTGGCGGTGAGCGGAACCGCTTGCTGCTGGCGCGTTTg < 1:398195/69‑1 (MQ=255)
aaaCGGGCGATGACGCCGGTACGTGCGCTTTCTGGCGGTGAGCGGAACCGCTTGCTGCTGGCGCGTTTg < 1:1975630/69‑1 (MQ=255)
aaaCGGGCGATGACGCCGGTACGTGCGCTTTCTGGCGGTGAGCGGAACCGCTTGCTGCTGGCGCGTTTg < 1:1979783/69‑1 (MQ=255)
aaaCGGGCGATGACGCCGGTACGTGCGCTTTCTGGCGGTGAGCGGAACCGCTTGCTGCTGGCGCGTTTg < 1:2268074/69‑1 (MQ=255)
aCGGGCGATGACGCCGGTACGTGCGCTTTCTGGCGGTGAGCGGAACCGCTTGCTGCTGGCGCGTTTg < 1:833772/67‑1 (MQ=255)
gACGCCGGTACGTGCGCTTTCTGGCGGTGAGCGGAACCGCTTGCTGCTGGCGCGTTTGTTCCTCaaa > 1:91413/1‑67 (MQ=255)
gACGCCGGTACGTGCGCTTTCTGGCGGTGAGCGGAACCGCTTGCTGCTGGCGCGTTTGTTCCTCaa > 1:1582221/1‑66 (MQ=255)
aCGCCGGTACGTGCGCTTTCTGGCGGTGAGCGGAACCGCTTGCTGCTGGCGCGTTTGTTCCTCAAACCa > 1:532525/1‑69 (MQ=255)
aCGCCGGTACGTGCGCTTTCTGGCGGTGAGCGGAACCGCTTGCTGCTGGCGCGTTTGTTCCTCAAACCa > 1:694803/1‑69 (MQ=255)
aCGCCGGTACGTGCGCTTTCTGGCGGTGAGCGGAACCGCTTGCTGCTGGCGCGTTTGTTCCTCAAACCa > 1:1304048/1‑69 (MQ=255)
ggTACGTGCGCTTTCTTGCGGTGAGCGGAACCGCTTGCTGCTGGCGCGTTTGTTCCTCAAACCAAGCaa < 1:2746629/69‑1 (MQ=255)
ggTACGTGCGCTTTCTGGCGGTGAGCGGAACCGCTTGCTGCTGGCGCGTTTGTTCCTCAAACCAAGCaa < 1:58814/69‑1 (MQ=255)
ggTACGTGCGCTTTCTGGCGGTGAGCGGAACCGCTTGCTGCTGGCGCGTTTGTTCCTCAAACCAAGCaa < 1:396413/69‑1 (MQ=255)
ggTACGTGCGCTTTCTGGCGGTGAGCGGAACCGCTTGCTGCTGGCGCGTTTGTTCCTCAAACCAAGCaa < 1:1770488/69‑1 (MQ=255)
ggTACGTGCGCTTTCTGGCGGTGAGCGGAACCGCTTGCTGCTGGCGCGTTTGTTCCTCAAACCAAGCaa < 1:1810360/69‑1 (MQ=255)
ggTACGTGCGCTTTCTGGCGGTGAGAGGAACCGCTTGCTGCTGGCGCGTTTGTTCCTCAAACCAAGCaa < 1:2975916/69‑1 (MQ=255)
tACGTGCGCTTTCTGGCGGTGAGCGTAACCGCTTGTTGTTGGCGCGTTTGTTCCTCAAACCAAGCAACt < 1:2799308/69‑1 (MQ=255)
tACGTGCGCTTTCTGGCGGTGAGCGTAACCGCTTGTTGTTGGCGCGTTTGTTCCTCAAACCAAGCAACt < 1:3030787/69‑1 (MQ=255)
tACGTGCGCTTTCTGGCGGTGAGCGTAACCGCTTGTTGTTGGCGCGTTTGTTCCTCAAACCAAGCAACt < 1:3134252/69‑1 (MQ=255)
tACGTGCGCTTTCTGGCGGTGAGCGTAACCGCTTGTTGTTGGCGCGTTTGTTCCTCAAACCAAGCAACt < 1:2667695/69‑1 (MQ=255)
tACGTGCGCTTTCTGGCGGTGAGCGTAACCGCTTGTTGTTGGCGCGTTTGTTCCTCAAACCAAGCAACt < 1:2624145/69‑1 (MQ=255)
tACGTGCGCTTTCTGGCGGTGAGCGTAACCGCTTGTTGTTGGCGCGTTTGTTCCTCAAACCAAGCAACt < 1:1779894/69‑1 (MQ=255)
tACGTGCGCTTTCTGGCGGTGAGCGTAACCGCTTGTTGTTGGCGCGTTTGTTCCTCAAACCAAGCAACt < 1:1569890/69‑1 (MQ=255)
tACGTGCGCTTTCTGGCGGTGAGCGTAACCGCTTGTTGTTGGCGCGTTTGTTCCTCAAACCAAGCAACt < 1:60811/69‑1 (MQ=255)
tACGTGCGCTTTCTGGCGGTGAGCGTAACCGCTTGTTGTTGGCGCGTTTGTTCCTCAAACCAAGCAACt < 1:2477488/69‑1 (MQ=255)
tACGTGCGCTTTCTGGCGGTGAGCGTAACCGCTTGTTGTTGGCGCGTTTGTTCCTCAAACCAAGCAACt < 1:2473679/69‑1 (MQ=255)
tACGTGCGCTTTCTGGCGGTGAGCGTAACCGCTTGTTGTTGGCGCGTTTGTTCCTCAAACCAAGCAACt < 1:2188063/69‑1 (MQ=255)
tACGTGCGCTTTCTGGCGGTGAGCGTAACCGCTTGTTGTTGGCGCGTTTGTTCCTCAAACCAAGCAACt < 1:215323/69‑1 (MQ=255)
tACGTGCGCTTTCTGGCGGTGAGCGTAACCGCTTGTTGTTGGCGCGTTTGTTCCTCAAACCAAGCAACt < 1:2562558/69‑1 (MQ=255)
aCGTGCGCTTTCTGGCGGTGAGCGTAACCGCTTGTTGTTGGCGCGTTTGTTCCTCAAACCAAGCAACt < 1:2090449/68‑1 (MQ=255)
aCGTGCGCTTTCTGGCGGTGAGCGTAACCGCTTGTTGTTGGCGCGTTTGTTCCTCAAACCAAGCAACt < 1:2907302/68‑1 (MQ=255)
aCGTGCGCTTTCTGGCGGTGAGCGGAACCGCTTGCTGCTGGCGCGTTTGTTCCTCAAACCAAGCAACtg > 1:1127809/1‑68 (MQ=255)
tGCGCTTTCTGGCGGTGAGCGGAACCGCTTGCTGCTGGCGCGttt > 1:1125115/1‑45 (MQ=255)
tGCGCTTTCTGGCGGTGAGCGGAACCGCTTGCTGCTGGCGCGTTTGTTCCTCAAACCAAGCAACTTAtt > 1:968946/1‑69 (MQ=255)
tGCGCTTTCTGGCGGTGAGCGGAACCGCTTGCTGCTGGCGCGTTTGTTCCTCAAACCAAGCAACTTAtt > 1:844837/1‑69 (MQ=255)
tGCGCTTTCTGGCGGTGAGCGGAACCGCTTGCTGCTGGCGCGTTTGTTCCTCAAACCAAGCAACTTAtt > 1:279897/1‑69 (MQ=255)
tGAGCGTAACCGCTTGTTGTTGGGGCGTTTGTTCCTCAAagcaagca > 1:2300490/1‑47 (MQ=255)
tGAGCGTAACCGCTTGTTGTTGGCGCGTTTGTTCCTCAAACCaa > 1:2834314/1‑44 (MQ=255)
tGAGCGTAACCGCTTGTTGTTGGCGCGTTTGTTCCTCAAACCAAg > 1:3099418/1‑45 (MQ=255)
tGAGCGTAACCGCTTGTTGTTGGCGCGTTTGTTCCTCAAACCAAGCa > 1:762362/1‑47 (MQ=255)
tGAGCGTAACCGCTTGTTGTTGGCGCGTTTGTTCCTCAAACCAAGCa > 1:643336/1‑47 (MQ=255)
tGAGCGTAACCGCTTGTTGTTGGCGCGTTTGTTCCTCAAACCAAGCa > 1:3322267/1‑47 (MQ=255)
tGAGCGTAACCGCTTGTTGTTGGCGCGTTTGTTCCTCAAACCAAGCa > 1:78699/1‑47 (MQ=255)
tGAGCGTAACCGCTTGTTGTTGGCGCGTTTGTTCCTCAAACCAAGCa > 1:988607/1‑47 (MQ=255)
tGAGCGTAACCGCTTGTTGTTGGCGCGTTTGTTCCTCAAACCAAGCa > 1:3009901/1‑47 (MQ=255)
tGAGCGTAACCGCTTGTTGTTGGCGCGTTTGTTCCTCAAACCAAGCa > 1:1145694/1‑47 (MQ=255)
tGAGCGTAACCGCTTGTTGTTGGCGCGTTTGTTCCTCAAACCAAGCa > 1:1228884/1‑47 (MQ=255)
tGAGCGTAACCGCTTGTTGTTGGCGCGTTTGTTCCTCAAACCAAGCa > 1:1345140/1‑47 (MQ=255)
tGAGCGTAACCGCTTGTTGTTGGCGCGTTTGTTCCTCAAACCAAGCa > 1:1347452/1‑47 (MQ=255)
tGAGCGTAACCGCTTGTTGTTGGCGCGTTTGTTCCTCAAACCAAGCa > 1:1609611/1‑47 (MQ=255)
tGAGCGTAACCGCTTGTTGTTGGCGCGTTTGTTCCTCAAACCAAGCa > 1:1661749/1‑47 (MQ=255)
tGAGCGTAACCGCTTGTTGTTGGCGCGTTTGTTCCTCAAACCAAGCa > 1:1920898/1‑47 (MQ=255)
tGAGCGTAACCGCTTGTTGTTGGCGCGTTTGTTCCTCAAACCAAGCa > 1:1941652/1‑47 (MQ=255)
tGAGCGTAACCGCTTGTTGTTGGCGCGTTTGTTCCTCAAACCAAGCa > 1:2220270/1‑47 (MQ=255)
tGAGCGTAACCGCTTGTTGTTGGCGCGTTTGTTCCTCAAACCAAGCa > 1:2566182/1‑47 (MQ=255)
tGAGCGTAACCGCTTGTTGTTGGCGCGTTTGTTCCTCAAACCAAGCa > 1:2632846/1‑47 (MQ=255)
tGAGCGTAACCGCTTGTTGTTGGCGCGTTTGTTCCTCAAACCAAGCa > 1:2675202/1‑47 (MQ=255)
tGAGCGTAACCGCTTGTTGTTGGCGCGTTTGTTCCTCAAACCAAGCa > 1:2911466/1‑47 (MQ=255)
tGAGCGTAACCGCTTGTTGTTGGCGCGTTTGTTCCTCAAACCAAGCa > 1:3127787/1‑47 (MQ=255)
aGCGGAACCGCTTGCTGCTGGCGCGTTTGTTCCTCAAACCAAGCaa > 1:2707231/1‑46 (MQ=255)
aGCGGAACCGCTTGCTGCTGGCGCGTTTGTTCCTCAAACCAAGCAACTTATTGATTCTTGACGAACCg > 1:2363265/1‑68 (MQ=255)
aGCGGAACCGCTTGCTGCTGGCGCGTTTGTTCCTCAAACCAAGCAACTTATTGATTCTTGACGAACCg > 1:2336/1‑68 (MQ=255)
aGCGGAACCGCTTGCTGCTGGCGCGTTTGTTCCTCAAACCAAGCAACTTATTGATTCTTGACGAACCg > 1:2496825/1‑68 (MQ=255)
aGCGGAACCGCTTGCTGCTGGCGCGTTTGTTCCTCAAACCAAGCAACTTATTGATTCTTGACGAACCg > 1:2500842/1‑68 (MQ=255)
aGCGGAACCGCTTGCTGCTGGCGCGTTTGTTCCTCAAACCAAGCAACTTATTGATTCTTGACGAACCg > 1:1865120/1‑68 (MQ=255)
aGCGGAACCGCTTGCTGCTGGCGCGTTTGTTCCTCAAACCAAGCAACTTATTGATTCTTGACGAACCg > 1:1647923/1‑68 (MQ=255)
aGCGGAACCGCTTGCTGCTGGCGCGTTTGTTCCTCAAACCAAGCAACTTATTGATTCTTGACGAACCg > 1:517180/1‑68 (MQ=255)
aGCGGAACCGCTTGCTGCTGGCGCGTTTGTTCCTCAAACCAAGCAACTTATTGATTCTTGACGAACCg > 1:1073460/1‑68 (MQ=255)
|
CGAAACGGGCGATGACGCCGGTACGTGCGCTTTCTGGCGGTGAGCGGAACCGCTTGCTGCTGGCGCGTTTGTTCCTCAAACCAAGCAACTTATTGATTCTTGACGAACCG > minE/667954‑668063
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
