Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I0 R1
|
4577 |
57.4 |
3436498 |
77.7% |
2670158 |
63.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
913,152 |
G→A |
41.6% |
A250A (GCC→GCT) |
ycjW ← |
predicted DNA‑binding transcriptional regulator |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 913,152 | 0 | G | A | 41.6%
| 26.9
/ 50.3
| 72 | A250A (GCC→GCT) | ycjW | predicted DNA‑binding transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base G (36/6); new base A (23/7); total (59/13) |
| Fisher's exact test for biased strand distribution p-value = 3.65e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
AATAGCAATATTTTTCTCTGCTGCCGCACGATAAATGCTCATTAATTTCAGGCTGTCAGTGGCAAACACCGCCTCAGGCAACGGTGACTGGCTTAATAATTGCCGTGCTGCTTTTAATGCAGTTTC > minE/913092‑913217
|
aaTAGCAATATTTTTCTCTGCTGCCGCACGATAAATGCTCATTAATTTCAGGCTGTCAGTGGCAAacac < 1:1824873/69‑1 (MQ=255)
aaTAGCAATATTTTTCTCTGCTGCCGCACGATAAATGCTCATTAATTTCAGGCTGTCAGTGGCAAacac < 1:1887910/69‑1 (MQ=255)
gCAATGTTTTTCTCTGCCGCCTCACGATAAATACTCATTAATTTCAGGCTGTCAGTAGCAAACACTGc > 1:3223044/1‑68 (MQ=255)
gCAATGTTTTTCTCTGCCGCCGCACGATAAATACTCATTAATTTCAGGCTGTCAGTAGCAAACACTGc > 1:2283437/1‑68 (MQ=255)
gCAATGTTTTTCTCTGCCGCCGCACGATAAATACTCATTAATTTCAGGCTGTCAGTAGCAAACACTGc > 1:1971371/1‑68 (MQ=255)
gCAATGTTTTTCTCTGCCGCCGCACGATAAATACTCATTAATTTCAGGCTGTCAGTAGCAAACACTGc > 1:205288/1‑68 (MQ=255)
gCAATGTTTTTCTCTGCCGCCGCACGATAAATACTCATTAATTTCAGGCTGTCAGTAGCAAACACTGc > 1:2090814/1‑68 (MQ=255)
gCAATGTTTTTCTCTGCCGCCGCACGATAAATACTCATTAATTTCAGGCTGTCAGTAGCAAACACTGc > 1:3349445/1‑68 (MQ=255)
gCAATGTTTTTCTCTGCCGCCGCACGATAAATACTCATTAATTTCAGGCTGTCAGTAGCAAACACTGc > 1:2193029/1‑68 (MQ=255)
gCAATGTTTTTCTCTGCCGCCGCACGATAAATACTCATTAATTTCAGGCTGTCAGTAGCAAACACTGc > 1:3326042/1‑68 (MQ=255)
gCAATGTTTTTCTCTGCCGCCGCACGATAAATACTCATTAATTTCAGGCTGTCAGTAGCAAACACTGc > 1:363657/1‑68 (MQ=255)
gCAATGTTTTTCTCTGCCGCCGCACGATAAATACTCATTAATTTCAGGCTGTCAGTAGCAAACACTGc > 1:2395207/1‑68 (MQ=255)
gCAATGTTTTTCTCTGCCGCCGCACGATAAATACTCATTAATTTCAGGCTGTCAGTAGCAAACACTGc > 1:2564060/1‑68 (MQ=255)
gCAATGTTTTTCTCTGCCGCCGCACGATAAATACTCATTAATTTCAGGCTGTCAGTAGCAAACACTGc > 1:2566741/1‑68 (MQ=255)
gCAATGTTTTTCTCTGCCGCCGCACGATAAATACTCATTAATTTCAGGCTGTCAGTAGCAAACACTGc > 1:2735041/1‑68 (MQ=255)
gCAATGTTTTTCTCTGCCGCCGCACGATAAATACTCATTAATTTCAGGCTGTCAGTAGCAAACACTGc > 1:2872244/1‑68 (MQ=255)
gCAATGTTTTTCTCTGCCGCCGCACGATAAATACTCATTAATTTCAGGCTGTCAGTAGCAAACACTGc > 1:2819403/1‑68 (MQ=255)
gCAATGTTTTTCTCTGCCGCCGCACGATAAATACTCATTAATTTCAGGCTGTCAGTAGCAAACACTGc > 1:1846566/1‑68 (MQ=255)
gCAATGTTTTTCTCTGCCGCCGCACGATAAATACTCATTAATTTCAGGCTGTCAGTAGCAAACACTGc > 1:455441/1‑68 (MQ=255)
gCAATGTTTTTCTCTGCCGCCGCACGATAAATACTCATTAATTTCAGGCTGTCAGTAGCAAACACTGc > 1:995923/1‑68 (MQ=255)
gCAATGTTTTTCTCTGCCGCCGCACGATAAATACTCATTAATTTCAGGCTGTCAGTAGCAAACACTGc > 1:1794699/1‑68 (MQ=255)
gCAATGTTTTTCTCTGCCGCCGCACGATAAATACTCATTAATTTCAGGCTGTCAGTAGCAAACACTGc > 1:458528/1‑68 (MQ=255)
gCAATGTTTTTCTCTGCCGCCGCACGATAAATACTCATTAATTTCAGGCTGTCAGTAGCAAACACTGc > 1:667197/1‑68 (MQ=255)
gCAATGTTTTTCTCTGCCGCCGCACGATAAATACTCATTAATTTCAGGCTGTCAGTAGCAAACACTGc > 1:1160422/1‑68 (MQ=255)
gCAATGTTTTTCTCTGCCGCCGCACGATAAATACTCATTAATTTCAGGCTGTCAGTAGCAAACACTGc > 1:904660/1‑68 (MQ=255)
gCAATATTTTTCTCTGCTGCCGCACGATAAATGCTCATTAATTTCAGGCTGTCAGTGGCAAACACCGc > 1:1747874/1‑68 (MQ=255)
gCAATATTTTTCTCTGCTGCCGCACGATAAATGCTCATTAATTTCAGGCTGTCAGTGGCAAACACCGc > 1:2170423/1‑68 (MQ=255)
gCAATATTTTTCTCTGCTGCCGCACGATAAATGCTCATTAATTTCAGGCTGTCAGTGGCAAACACCGc > 1:1444230/1‑68 (MQ=255)
gCAATATTTTTCTCTGCTGCCGCACGATAAATGCTCATTAATTTCAGGCTGTCAGTGGCAAACACCGc > 1:1168473/1‑68 (MQ=255)
gCAATATTTTTCTCTGCTGCCGCACGATAAATGCTCATTAATTTCAGGCTGTCAGTGGCAAACACCGc > 1:934858/1‑68 (MQ=255)
gCAATATTTTTCTCTGCTGCCGCACGATAAATGCTCATTAATTTCAGGCTGTCAGTGGCAAACACCGc > 1:3228163/1‑68 (MQ=255)
tttttCTCTGCTGCCGCAGGATAAATGCTCATTAATTTCAGGCTGTCAGTGGCAAACACCGCCTCAGGc > 1:2059588/1‑69 (MQ=255)
tttttCTCTGCTGCCGCACGATAAATGCTCATTAATTTCAGGCTGTCAGTGGCAAACACCGcc > 1:409359/1‑63 (MQ=255)
tttttCTCTGCTGCCGCACGATAAATGCTCATTAATTTCAGGCTGTCAGTGGCAAACACCGCCTCAGGc > 1:332196/1‑69 (MQ=255)
tttttCTCTGCTGCCGCACGATAAATGCTCATTAATTTCAGGCTGTCAGTGGCAAACACCGCCTCAGGc > 1:952814/1‑69 (MQ=255)
tttttCTCTGCTGCCGCACGATAAATGCTCATTAATTTCAGGCTGTCAGTGGCAAACACCGCCTCAGGc > 1:993620/1‑69 (MQ=255)
tttttCTCTGCTGCCGCACGATAAATGCTCATTAATTTCAGGCTGTCAGTGGCAAACACCGCCTCAGGc > 1:2890064/1‑69 (MQ=255)
tttttCTCTGCTGCCGCACGATAAATGCTCATTAATTTCAGGCTGTCAGTGGCAAACACCGCCTCAGGc > 1:811409/1‑69 (MQ=255)
tttttCTCTGCTGCCGCACGATAAATGCTCATTAATTTCAGGCTGTCAGTGGCAAACACCGCCTCAGGc < 1:800806/69‑1 (MQ=255)
tttttCTCTGCTGCCGCACGATAAATGCTCATTAATTTCAGGCTGTCAGTGGCAAACACCGCCTCAGGc > 1:2853894/1‑69 (MQ=255)
tttttCTCTGCTGCCGCACGATAAATGCTCATTAATTTCAGGCTGTCAGTGGCAAACACCGCCTCAGGc < 1:26251/69‑1 (MQ=255)
tttttCTCTGCTGCCGCACGATAAATGCTCATTAATTTCAGGCTGTCAGTGGCAAACACCGCCTCAGGc > 1:1809245/1‑69 (MQ=255)
tttttCTCTGCTGCCGCACGATAAATGCTCATTAATTTCAGGCTGTCAGTGGCAAACACCGCCTCAGGc > 1:1142495/1‑69 (MQ=255)
tttttCTCTGCTGCCGCACGATAAATGCTCATTAATTTCAGGCTGTCAGTGGCAAACACCGCCTCAGGc > 1:1172037/1‑69 (MQ=255)
tttttCTCTGCTGCCGCACGATAAATGCTCATTAATTTCAGGCTGTCAGTGGCAAACACCGCCTCAGGc > 1:1250054/1‑69 (MQ=255)
tttttCTCTGCTGCCGCACGATAAATGCTCATTAATTTCAGGCTGTCAGTGGCAAACACCGCCTCAGGc > 1:129831/1‑69 (MQ=255)
tttttCTCTGCTGCCGCACGATAAATGCTCATTAATTTCAGGCTGTCAGTGGCAAACACCGCCTCAGGc > 1:1489955/1‑69 (MQ=255)
tttttCTCTGCTGCCGCACGATAAATGCTCATTAATTTCAGGCTGTCAGTGGCAAACACCGCCTCAGGc > 1:1887843/1‑69 (MQ=255)
tttttCTCTGCTGCCGCACGATAAATGCTCATTAATTTCAGGCTGTCAGTGGCAAACACCGCCTCAGGc > 1:2210100/1‑69 (MQ=255)
tttttCTCTGCTGCCGCACGATAAATGCTCATTAATTTCAGGCTGTCAGTGGCAAACACCGCCTCAGGc > 1:2387927/1‑69 (MQ=255)
tttttCTCTGCTGCCGCACGATAAATGCTCATTAATTTCAGGCTGTCAGTGGCAAACACCGCCTCAGGc > 1:1044638/1‑69 (MQ=255)
tttttCTCTGCTGCCGCACGATAAATGCTCATTAATTTCAGGCTGTCAGTGGCAAACACCGCCTCAGGc > 1:2605905/1‑69 (MQ=255)
ctgctgCCGCACGATAAATGCTCATTAATTTCAGGCTGTCAGTGGCAAACACCGCCTCGGGCAACGGt < 1:434800/68‑1 (MQ=255)
ctgctgCCGCACGATAAATGCTCATTAATTTCAGGCTGTCAGTGGCAAACACCGCCTCAGGCAACGGt < 1:521871/68‑1 (MQ=255)
gCACGATAAATACTCATTAATTTCAGGCTGTCAGTAGCAAACACTGCCTCAGGCAACGGTGACTGGCtt < 1:2549699/69‑1 (MQ=255)
gCACGATAAATACTCATTAATTTCAGGCTGTCAGTAGCAAACACTGCCTCAGGCAACGGTGACTGGCtt < 1:2744521/69‑1 (MQ=255)
gCACGATAAATACTCATTAATTTCAGGCTGTCAGTAGCAAACACTGCCTCAGGCAACGGTGACTGGCtt < 1:1178557/69‑1 (MQ=255)
gCACGATAAATACTCATTAATTTCAGGCTGTCAGTAGCAAACACTGCCTCAGGCAACGGTGACTGGCtt < 1:759275/69‑1 (MQ=255)
gCACGATAAATACTCATTAATTTCAGGCTGTCAGTAGCAAACACTGCCTCAGGCAACGGTGACTGGCtt < 1:703026/69‑1 (MQ=255)
gCACGATAAATACTCATTAATTTCAGGCTGTCAGTAGCAAACACTGCCTCAGGCAACGGTGACTGGCtt < 1:1772127/69‑1 (MQ=255)
gCACGATAAATACTCATTAATTTCAGGCTGTCAGTAGCAAACACTGCCTCAGGCAACGGTGACTGGCtt < 1:1961725/69‑1 (MQ=255)
aaTGCTCATTAATTTCAGGCTGTCAGTGGCAAACACCGCCTCAGGCAACGGTGACTGGCTTAATAATTg > 1:1545288/1‑69 (MQ=255)
tGTCAGTGGCAAACACCGCCTCAGGCAACGGTGACTGGCTTAATAATTGCCGTGCTGCTTTTAATGCAg > 1:66212/1‑69 (MQ=255)
tGTCAGTGGCAAACACCGCCTCAGGCAACGGTGACTGGCTTAATAATTGCCGTGCTGCTTTTAATGCAg > 1:2783117/1‑69 (MQ=255)
tGTCAGTGGCAAACACCGCCTCAGGCAACGGTGACTGGCTTAATAATTGCCGTGCTGCTTTTAATGCAg > 1:870538/1‑69 (MQ=255)
tGTCAGTGGCAAACACCGCCTCAGGCAACGGTGACTGGCTTAATAATTGCCGTGCTGCTTTTAATGCAg > 1:1290186/1‑69 (MQ=255)
tGTCAGTGGCAAACACCGCCTCAGGCAACGGTGACTGGCTTAATAATTGCCGTGCTGCTTTTAATGCAg > 1:2982/1‑69 (MQ=255)
tGTCAGTGGCAAACACCGCCTCAGGCAACGGTGACTGGCTTAATAATTGCCGTGCTGCTTTTAATGCAg > 1:940310/1‑69 (MQ=255)
tGTCAGTGGCAAACACCGCCTCAGGCAACGGTGACTGGCTTAATAATTGCCGTGCTGCTTTTAATGCAg > 1:400632/1‑69 (MQ=255)
tGTCAGTGGCAAACACCGCCTCAGGCAACGGTGACTGGCTTAATAATTGCCGTGCTGCTTTTAATGCAg > 1:2167684/1‑69 (MQ=255)
aGTGGCAAACACCGCCTCAGGCAACGGTGACTGGCTTAATAATTGCCGTGCTGCTTTTAATGCAGTTTc > 1:3145461/1‑69 (MQ=255)
aGTGGCAAACACCGCCTCAGGCAACGGTGACTGGCTTAATAATTGCCGTGCTGCTTTTAATGCAGTTTc > 1:3098196/1‑69 (MQ=255)
|
AATAGCAATATTTTTCTCTGCTGCCGCACGATAAATGCTCATTAATTTCAGGCTGTCAGTGGCAAACACCGCCTCAGGCAACGGTGACTGGCTTAATAATTGCCGTGCTGCTTTTAATGCAGTTTC > minE/913092‑913217
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
