Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I0 R1
|
4577 |
57.4 |
3436498 |
77.7% |
2670158 |
63.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
913,954 |
G→C |
41.6% |
intergenic (‑53/‑103) |
ycjW ← / → ycjX |
predicted DNA‑binding transcriptional regulator/conserved hypothetical protein with nucleoside triphosphate hydrolase domain |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 913,954 | 0 | G | C | 41.6%
| 55.4
/ 114.8
| 115 | intergenic (‑53/‑103) | ycjW/ycjX | predicted DNA‑binding transcriptional regulator/conserved hypothetical protein with nucleoside triphosphate hydrolase domain |
| Reads supporting (aligned to +/- strand): ref base G (27/39); new base C (24/23); total (53/62) |
| Fisher's exact test for biased strand distribution p-value = 3.39e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.82e-01 |
Only 100 of 115 total aligned reads displayed.
AGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACATTCATATCCT > minE/913890‑914011
|
agtagGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCg < 1:3277242/69‑1 (MQ=255)
agtagGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCg < 1:640180/69‑1 (MQ=255)
agtagGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCg < 1:3023016/69‑1 (MQ=255)
agtagGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCg < 1:2285232/69‑1 (MQ=255)
agtagGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCg < 1:1362081/69‑1 (MQ=255)
agtagGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCg < 1:1555293/69‑1 (MQ=255)
gtagGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCg < 1:2619355/68‑1 (MQ=255)
tagGGGACATAGGTCAGGAACTCCGTCCGAAGGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGAt > 1:3170211/1‑69 (MQ=255)
tagGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCTGTCGAt > 1:2118314/1‑69 (MQ=255)
tagGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGa > 1:2712567/1‑68 (MQ=255)
tagGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGa > 1:1415886/1‑68 (MQ=255)
tagGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGAt > 1:1016605/1‑69 (MQ=255)
tagGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGAt > 1:407441/1‑69 (MQ=255)
tagGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGAt > 1:3050910/1‑69 (MQ=255)
tagGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGAt > 1:1308187/1‑69 (MQ=255)
tagGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGAt > 1:1177360/1‑69 (MQ=255)
agGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCgtt > 1:2694735/1‑66 (MQ=255)
gACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGacaa > 1:3129359/1‑69 (MQ=255)
gACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGacaa < 1:2605230/69‑1 (MQ=255)
gACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGacaa < 1:3156058/69‑1 (MQ=255)
gACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGacaa > 1:328060/1‑69 (MQ=255)
gACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGacaa < 1:3283136/69‑1 (MQ=255)
gACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGacaa < 1:3365389/69‑1 (MQ=255)
gACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGacaa < 1:2696807/69‑1 (MQ=255)
gACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGacaa < 1:2110482/69‑1 (MQ=255)
gACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGacaa > 1:366590/1‑69 (MQ=255)
gACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGacaa < 1:858054/69‑1 (MQ=255)
gACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGacaa < 1:656601/69‑1 (MQ=255)
gACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGacaa < 1:958829/69‑1 (MQ=255)
gACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGacaa < 1:426105/69‑1 (MQ=255)
gACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGacaa > 1:1941800/1‑69 (MQ=255)
gACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTCCACATCTTATGGAGTTCGCCGGTCGATGacaa > 1:2945983/1‑69 (MQ=255)
tAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATTGAGTTCGCCGGTCGATGacaa < 1:2927382/65‑1 (MQ=255)
tAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCCGTCGATGACAACACg < 1:2693388/69‑1 (MQ=255)
tAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCCGTCGATGACAACACg < 1:1087716/69‑1 (MQ=255)
tAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCCGTCGATGACAACACg < 1:1244563/69‑1 (MQ=255)
tAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCCGTCGATGACAACACg < 1:1346615/69‑1 (MQ=255)
tAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCCGTCGATGACAACACg < 1:2670442/69‑1 (MQ=255)
tAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCCGTCGATGACAACACg < 1:2620161/69‑1 (MQ=255)
tAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCCGTCGATGACAACACg < 1:1078180/69‑1 (MQ=255)
tAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCCGTCGATGACAACACg < 1:1393419/69‑1 (MQ=255)
tAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCCGTCGATGACAACACg < 1:2415288/69‑1 (MQ=255)
tAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCCGTCGATGACAACACg < 1:2476612/69‑1 (MQ=255)
tAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCCGTCGATGACAACACg < 1:66865/69‑1 (MQ=255)
tAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCCGTCGATGACAACACg < 1:1966241/69‑1 (MQ=255)
tAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCCGTCGATGACAACACg < 1:3151601/69‑1 (MQ=255)
tAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCCGTCGATGACAACACg < 1:656178/69‑1 (MQ=255)
tAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCCGTCGATGACAACACg < 1:1751164/69‑1 (MQ=255)
tAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCCGTCGATGACAACACg < 1:1940802/69‑1 (MQ=255)
tAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCCGTCGATGACAACACg < 1:2062386/69‑1 (MQ=255)
tAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCCGTCGATGACAACACg < 1:2021899/69‑1 (MQ=255)
aGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACg > 1:611331/1‑68 (MQ=255)
aGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACg > 1:597384/1‑68 (MQ=255)
aGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACg > 1:58918/1‑68 (MQ=255)
aGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACg > 1:3405784/1‑68 (MQ=255)
aGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACg > 1:968982/1‑68 (MQ=255)
aGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACg > 1:1688424/1‑68 (MQ=255)
ggTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACg > 1:1398200/1‑67 (MQ=255)
ggTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACg > 1:2678214/1‑67 (MQ=255)
ggTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACg > 1:2057099/1‑67 (MQ=255)
ggTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACg > 1:2128300/1‑67 (MQ=255)
gAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTg < 1:2841918/69‑1 (MQ=255)
gAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTg < 1:1772475/69‑1 (MQ=255)
gAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTg < 1:1815807/69‑1 (MQ=255)
gAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTg < 1:1958981/69‑1 (MQ=255)
gAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTg < 1:357655/69‑1 (MQ=255)
gAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTg < 1:356120/69‑1 (MQ=255)
gAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTg < 1:2328993/69‑1 (MQ=255)
gAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTAGATGACAACACGGGCAGTTg < 1:291127/69‑1 (MQ=255)
aCTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGAt < 1:3090689/69‑1 (MQ=255)
tgctgcACATCTTATGGAGTTCGCCCGTCGATGacaac > 1:536228/1‑38 (MQ=255)
tgctgcACATCTTATGGAGTTCGCCCGTCGATGACAACACgggta > 1:1955028/1‑43 (MQ=255)
tgctgcACATCTTATGGAGTTCGCCCGTCGATGACAACACGGGTAGTTGATAATCAAtggcctggcc > 1:330567/1‑67 (MQ=255)
tgctgcACATCTTATGGAGTTCGCCCGTCGATGACAACACGGGTAGTTGATAATCAAtggcctggc > 1:1625704/1‑66 (MQ=255)
tgctgcACATCTTATGGAGTTCGCCCGTCGATGACAACACGGGTAGTTGATAATCAATGGCCTGGcccc > 1:860097/1‑69 (MQ=255)
tgctgcACATCTTATGGAGTTCGCCCGTCGATGACAACACGGGTAGTTGATAATCAATGGCCTGGcccc > 1:951153/1‑69 (MQ=255)
tgctgcACATCTTATGGAGTTCGCCCGTCGATGACAACACGGGTAGTTGATAATCAATGGCCTGGcccc > 1:665422/1‑69 (MQ=255)
tgctgcACATCTTATGGAGTTCGCCCGTCGATGACAACACGGGTAGTTGATAATCAATGGCCTGGcccc > 1:2913356/1‑69 (MQ=255)
tgctgcACATCTTATGGAGTTCGCCCGTCGATGACAACACGGGTAGTTGATAATCAATGGCCTGGcccc > 1:652407/1‑69 (MQ=255)
tgctgcACATCTTATGGAGTTCGCCCGTCGATGACAACACGGGTAGTTGATAATCAATGGCCTGGcccc > 1:2687535/1‑69 (MQ=255)
tgctgcACATCTTATGGAGTTCGCCCGTCGATGACAACACGGGTAGTTGATAATCAATGGCCTGGcccc > 1:956963/1‑69 (MQ=255)
tgctgcACATCTTATGGAGTTCGCCCGTCGATGACAACACGGGTAGTTGATAATCAATGGCCTGGcccc > 1:1856361/1‑69 (MQ=255)
tgctgcACATCTTATGGAGTTCGCCCGTCGATGACAACACGGGTAGTTGATAATCAATGGCCTGGcccc > 1:1914501/1‑69 (MQ=255)
tgctgcACATCTTATGGAGTTCGCCCGTCGATGACAACACGGGTAGTTGATAATCAATGGCCTGGcccc > 1:513925/1‑69 (MQ=255)
tgctgcACATCTTATGGAGTTCGCCCGTCGATGACAACACGGGTAGTTGATAATCAATGGCCTGGcccc > 1:2415557/1‑69 (MQ=255)
tgctgcACATCTTATGGAGTTCGCCCGTCGATGACAACACGGGTAGTTGATAATCAATGGCCTGGcccc > 1:1084677/1‑69 (MQ=255)
tgctgcACATCTTATGGAGTTCGCCCGTCGATGACAACACGGGTAGTTGATAATCAATGGCCTGGcccc > 1:2383928/1‑69 (MQ=255)
tgctgcACATCTTATGGAGTTCGCCCGTCGATGACAACACGGGTAGTTGATAATCAATGGCCTGGcccc > 1:2078723/1‑69 (MQ=255)
tgctgcACATCTTATGGAGTTCGCCCGTCGATGACAACACGGGTAGTTGATAATCAATGGCCTGGcccc > 1:3162471/1‑69 (MQ=255)
tgctgcACATCTTATGGAGTTCGCCCGTCGATGACAACACGGGTAGTTGATAATCAATGGCCTGGcccc > 1:2176694/1‑69 (MQ=255)
tgctgcACATCTTATGGAGTTCGCCCGTCGATGACAACACGGGTAGTTGATAATCAATGGCCTGGcccc > 1:2265736/1‑69 (MQ=255)
tgctgcACATCTTATGGAGTTCGCCCGTCGATGACAACACGGGTAGTTGATAATCAATGGCCTGGcccc > 1:2273827/1‑69 (MQ=255)
tgctgcACATCTTATGGAGTTCGCCCGTCGATGACAACACGGGTAGTTGATAATCAATGGCCTGGcccc > 1:2275567/1‑69 (MQ=255)
tgctgcACATCTTATGGAGTTCGCCCGTCGATGACAACACGGGTAGTTGATAATCAATGGCCTGGccc > 1:3262967/1‑68 (MQ=255)
gctgcACATCTTATGGAGTTCGCCCGTCGATGACAACACg < 1:315147/40‑1 (MQ=255)
aTCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCCCATTCa < 1:7928/69‑1 (MQ=255)
ttATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTg < 1:2862543/38‑1 (MQ=255)
ggAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACATTCATATCCt < 1:1450140/68‑1 (MQ=255)
ggAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACATTCATATCCt < 1:267955/68‑1 (MQ=255)
ggAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACATTCATATCCt < 1:10140/68‑1 (MQ=255)
|
AGTAGGGGACATAGGTCAGGAACTCCGTCCGAACGTGAATGCTGCACATCTTATGGAGTTCGCCGGTCGATGACAACACGGGCAGTTGATAATCAATGGCCTGGCCCCCACATTCATATCCT > minE/913890‑914011
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
