Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I0 R1
|
4577 |
57.4 |
3436498 |
77.7% |
2670158 |
63.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
977,549 |
C→A |
28.8% |
L532L (CTG→CTT) |
dcp ← |
dipeptidyl carboxypeptidase II |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 977,549 | 0 | C | A | 28.8%
| 138.3
/ 52.8
| 97 | L532L (CTG→CTT) | dcp | dipeptidyl carboxypeptidase II |
| Reads supporting (aligned to +/- strand): ref base C (44/25); new base A (21/7); total (65/32) |
| Fisher's exact test for biased strand distribution p-value = 3.46e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.27e-01 |
Only 100 of 101 total aligned reads displayed.
GCGGCGCTAAGCAGTTCGCTCATCTCATACCCTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAGGCATTGCTGCCCCGCTCTGATAATGCCGGGCGTAGCGAGCGAATACCTGCGGATGC > minE/977481‑977615
|
gcggcgCTAAGCAGTTCGCTCATCTCATACCCTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGc > 1:2914876/1‑69 (MQ=255)
gcggcgCTAAGCAGTTCGCTCATCTCATACCCTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGc > 1:348859/1‑69 (MQ=255)
gcggcgCTAAGCAGTTCGCTCATCTCATACCCTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGc > 1:1078988/1‑69 (MQ=255)
gcggcgCTAAGCAGTTCGCTCATCTCATACCCTTTGTTGAACAGGCCGGCATTACGCATTTTCTGTTGc > 1:1577119/1‑69 (MQ=255)
ttCGCTCATCTCATACCCTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAGGCAt < 1:1070696/69‑1 (MQ=255)
ttCGCTCATCTCATACCCTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAGGCAt < 1:3165033/69‑1 (MQ=255)
ttCGCTCATCTCATACCCTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAGGCAt < 1:1127849/69‑1 (MQ=255)
ttCGCTCATCTCATACCCTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAGGCAt < 1:1152535/69‑1 (MQ=255)
ttCGCTCATCTCATACCCTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAGGCAt < 1:3305782/69‑1 (MQ=255)
ttCGCTCATCTCATACCCTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAGGCAt < 1:3341267/69‑1 (MQ=255)
ttCGCTCATCTCATACCCTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAGGCAt < 1:1267039/69‑1 (MQ=255)
ttCGCTCATCTCATACCCTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAGGCAt < 1:2591929/69‑1 (MQ=255)
ttCGCTCATCTCATACCCTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAGGCAt < 1:376365/69‑1 (MQ=255)
ttCGCTCATCTCATACCCTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAGGCAt < 1:2072575/69‑1 (MQ=255)
ttCGCTCATCTCATACCCTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAGGCAt < 1:444930/69‑1 (MQ=255)
ttCGCTCATCTCATACCCTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAGGCAt < 1:598469/69‑1 (MQ=255)
ttCGCTCATCTCATACCCTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAGGCAt < 1:632177/69‑1 (MQ=255)
cGCTCATCTCATACCCTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAgg > 1:3237462/1‑64 (MQ=255)
cGCTCATCTCATACCCTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAgg > 1:1587677/1‑64 (MQ=255)
cGCTCATCTCATACCCTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAgg > 1:1786753/1‑64 (MQ=255)
cGCTCATCTCATACCCTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAgg > 1:1251125/1‑64 (MQ=255)
cGCTCATCTCATACCCTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAgg > 1:1379855/1‑64 (MQ=255)
cGCTCATCTCATACCCTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAgg > 1:1507889/1‑64 (MQ=255)
cGCTCATCTCATACCCTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAGGCAt < 1:2686172/67‑1 (MQ=255)
gCTCATCTCATACCCTTTATTGAACAGACTGGCATTACGCATTTTCTGTTGAAGTTCGTGAGGCATtgc > 1:1060269/1‑69 (MQ=255)
gCTCATCTCATACCCTTTATTGAACAGACTGGCATTACGCATTTTCTGTTGAAGTTCGTCAGGCATtgc > 1:1255391/1‑69 (MQ=255)
gCTCATCTCATACCCTTTATTGAACAGACTGGCATTACGCATTTTCTGTTGAAGTTCGTCAGGCATtgc > 1:2750454/1‑69 (MQ=255)
gCTCATCTCATACCCTTTATTGAACAGACTGGCATTACGCATTTTCTGTTGAAGTTCGTCAGGCATtgc > 1:1101073/1‑69 (MQ=255)
gCTCATCTCATACCCTTTATTGAACAGACTGGCATTACGCATTTTCTGTTGAAGTTCGTCAGGCATtgc > 1:3201526/1‑69 (MQ=255)
gCTCATCTCATACCCTTTATTGAACAGACTGGCATTACGCATTTTCTGTTGAAGTTCGTCAGGCATtgc > 1:3223760/1‑69 (MQ=255)
gCTCATCTCATACCCTTTATTGAACAGACTGGCATTACGCATTTTCTGTTGAAGTTCGTCAGGCATtgc > 1:2342984/1‑69 (MQ=255)
gCTCATCTCATACCCTTTATTGAACAGACTGGCATTACGCATTTTCTGTTGAAGTTCGTCAGGCATtgc > 1:2340616/1‑69 (MQ=255)
gCTCATCTCATACCCTTTATTGAACAGACTGGCATTACGCATTTTCTGTTGAAGTTCGTCAGGCATtgc > 1:2295253/1‑69 (MQ=255)
gCTCATCTCATACCCTTTATTGAACAGACTGGCATTACGCATTTTCTGTTGAAGTTCGTCAGGCATtgc > 1:1336297/1‑69 (MQ=255)
gCTCATCTCATACCCTTTATTGAACAGACTGGCATTACGCATTTTCTGTTGAAGTTCGTCAGGCATtgc > 1:2031721/1‑69 (MQ=255)
gCTCATCTCATACCCTTTATTGAACAGACTGGCATTACGCATTTTCTGTTGAAGTTCGTCAGGCATtgc > 1:1533286/1‑69 (MQ=255)
gCTCATCTCATACCCTTTATTGAACAGACTGGCATTACGCATTTTCTGTTGAAGTTCGTCAGGCATtgc > 1:524421/1‑69 (MQ=255)
gCTCATCTCATACCCTTTATTGAACAGACTGGCATTACGCATTTTCTGTTGAAGTTCGTCAGGCATtgc > 1:596261/1‑69 (MQ=255)
gCTCATCTCATACCCTTTATTGAACAGACTGGCATTACGCATTTTCTGTTGAAGTTCGTCAGGCATtgc > 1:733131/1‑69 (MQ=255)
gCTCATCTCATACCCTTTATTGAACAGACTGGCATTACGCATTTTCTGTTGAAGTTCGTCAGGCATtgc > 1:1541722/1‑69 (MQ=255)
gCTCATCTCATACCCTTTATTGAACAGACTGGCATTACGCATTTTCTGTTGAAGTTCGTCAGGCATtg > 1:793010/1‑68 (MQ=255)
gCTCATCTCATACCCTTTATTGAACAGACTGGCATTACGCATTTTCTGTTGAAGTTCGTCAGGCATtg > 1:814167/1‑68 (MQ=255)
gCTCATCTCATACCCTTTATTGAACAGACTGGCATTACGCATTTTCTGTTGAAGTTCGTCAGGCATtg > 1:1756670/1‑68 (MQ=255)
gCTCATCTCATACCCTTTATTGAACAGACTGGCATTACGCATTTTCTGTTGAAGTTCGTCAGGCATtg > 1:1760342/1‑68 (MQ=255)
gCTCATCTCATACCCTTTATTGAACAGACTGGCATTACGCATTTTCTGTTGAAGTTAGTCAGGCATtgc > 1:1664437/1‑69 (MQ=255)
cccTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGCATTTCGTCAGGCATTGCTGCCCCGctct > 1:2476270/1‑68 (MQ=255)
cccTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAGGCATTGCTGCCCCGctct > 1:1070059/1‑68 (MQ=255)
cccTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAGGCATTGCTGCCCCGctct > 1:2690110/1‑68 (MQ=255)
cccTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAGGCATTGCTGCCCCGctct > 1:3124243/1‑68 (MQ=255)
cccTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAGGCATTGCTGCCCCGctct > 1:2577732/1‑68 (MQ=255)
cccTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAGGCATTGCTGCCCCGctct > 1:394760/1‑68 (MQ=255)
cccTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAGGCATTGCTGCCCCGctct > 1:753034/1‑68 (MQ=255)
cccTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAGGCATTGCTGCCCCGctct > 1:1740445/1‑68 (MQ=255)
cccTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAGGCATTGCTGCCCCGctct > 1:2407031/1‑68 (MQ=255)
cccTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAGGCATTGCTGCCCCGctct > 1:2383925/1‑68 (MQ=255)
cccTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAGGCATTGCTGCCCCGctct > 1:2321485/1‑68 (MQ=255)
cccTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAGGCATTGCTGCCCCGctct > 1:1769127/1‑68 (MQ=255)
cccTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAGGCATTGCTGCCCCGctct > 1:3246641/1‑68 (MQ=255)
cccTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAGGCATTGCTGCCCCGctct > 1:771326/1‑68 (MQ=255)
cccTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAGGCATTGCTGCCCCGctct > 1:1933222/1‑68 (MQ=255)
cccTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAGGCATTGCTGCCCCGctc > 1:824416/1‑67 (MQ=255)
cccTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAGGCATTGCTGCCCCGctat > 1:1101133/1‑66 (MQ=255)
ccTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTGGTCAGGCATTGCTGCCCCGCTCTg > 1:1961856/1‑68 (MQ=255)
cTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAGGCATTGCTGCCCCGCTCTGAt < 1:2950884/69‑1 (MQ=255)
cTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAGGCATTGCTGCCCCGCTCTGAt < 1:2152458/69‑1 (MQ=255)
tgttgAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAGGCATTGCTGCCCCGCTCTGATAAt > 1:2861823/1‑69 (MQ=255)
tgttgAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAGGCATTGCTGCCCCGCTCTGATAAt > 1:1544772/1‑69 (MQ=255)
tgttgAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAGGCATTGCTGCCCCGCTCTGATAAt > 1:2585276/1‑69 (MQ=255)
tgttgAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAGGCATTGCTGCCCCGCTCTGATAAt > 1:65144/1‑69 (MQ=255)
tgttgAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAGGCATTGCTGCCCCGCTCTGATAAt > 1:3201456/1‑69 (MQ=255)
tattgAACAGACTGGCATTACGCATTTTCTGTTGAAGTTCGTCAGGCATTGCGGCCCCGCTCTg < 1:2909671/62‑1 (MQ=255)
tattgAACAGACTGGCATTACGCATTTTCTGTTGAAGTTCGTCAGGCATTGCGGCCCCGCTCTg < 1:1608971/62‑1 (MQ=255)
tattgAACAGACTGGCATTACGCATTTTCTGTTGAAGTTCGTCAGGCATTGCGGCCCCGCTCTg < 1:1935502/62‑1 (MQ=255)
tattgAACAGACTGGCATTACGCATTTTCTGTTGAAGTTCGTCAGGCATTGCGGCCCCGCTCTg < 1:3313959/62‑1 (MQ=255)
tattgAACAGACTGGCATTACGCATTTTCTGTTGAAGTTCGTCAGGCATTGCGGCCCCGCTCTg < 1:3297709/62‑1 (MQ=255)
tattgAACAGACTGGCATTACGCATTTTCTGTTGAAGTTCGTCAGGCATTGCGGCCCCGCTCTg < 1:2853875/62‑1 (MQ=255)
tattgAACAGACTGGCATTACGCATTTTCTGTTGAAGTTCGTCAGGCATTGCGGCCCCGCTCTg < 1:241047/62‑1 (MQ=255)
gttgAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAGGCAt < 1:3172283/48‑1 (MQ=255)
aTTACGCATTTTCTGTTGCAGTTCGTCAGGCATTGCTGCCCCGCTCTGATAATGCCGGGCGTagcgcg > 1:2440281/1‑66 (MQ=255)
aTTACGCATTTTCTGTTGCAGTTCGTCAGGCATTGCTGCCCCGCTCTGATAATGCCGGGCGTagcgag > 1:2233609/1‑68 (MQ=255)
aTTACGCATTTTCTGTTGCAGTTCGTCAGGCATTGCTGCCCCGCTCTGATAATGCCGGGCGTagcgag > 1:2178238/1‑68 (MQ=255)
aTTACGCATTTTCTGTTGCAGTTCGTCAGGCATTGCTGCCCCGCTCTGATAATGCCGGGCGTagcgag > 1:3200609/1‑68 (MQ=255)
aTTACGCATTTTCTGTTGCAGTTCGTCAGGCATTGCTGCCCCGCTCTGATAATGCCGGGCGTagcgag > 1:521807/1‑68 (MQ=255)
ttACGCATTTTCTGTTGCAGTTCGTCAGGCATTGCTGCCCCGCTCTGATAATGCCGGGCGTagcgagcg < 1:164964/69‑1 (MQ=255)
ttACGCATTTTCTGTTGCAGTTCGTCAGGCATTGCTGCCCCGCTCTGATAATGCCGGGCGTagcgagcg < 1:168646/69‑1 (MQ=255)
ttACGCATTTTCTGTTGCAGTTCGTCAGGCATTGCTGCCCCGCTCTGATAATGCCGGGCGTagcgagcg < 1:458720/69‑1 (MQ=255)
aCGCATTTTCTGTTGCAGTTCGTCAGGCATTGCTGCCCCGCTCTGATAATGCCGGGCGTAGCGAGCGaa > 1:1003620/1‑69 (MQ=255)
ttCTGTTGCAGTTCGTCAGGCATTGCTGCCCCGCTCTGATAATGCCGGGCGTAGCGAGCGAATAcc > 1:447280/1‑66 (MQ=255)
ttCTGTTGCAGTTCGTCAGGCATTGCTGCCCCGCTCTGATAATGCCGGGCGTAGCGAGCGAATACCTg > 1:464172/1‑68 (MQ=255)
ttCTGTTGCAGTTCGTCAGGCATTGCTGCCCCGCTCTGATAATGCCGGGCGTAGCGAGCGAATACCTg > 1:1825820/1‑68 (MQ=255)
ttCTGTTGCAGTTCGTCAGGCATTGCTGCCCCGCTCTGATAATGCCGGGCGTAGCGAGCGAATACCTg > 1:1751280/1‑68 (MQ=255)
ttCTGTTGCAGTTCGTCAGGCATTGCTGCCCCGCTCTGATAATGCCGGGCGTAGCGAGCGAATACCTg > 1:3204536/1‑68 (MQ=255)
ttCTGTTGCAGTTCGTCAGGCATTGCTGCCCCGCTCTGATAATGCCGGGCGTAGCGAGCGAATACCTg > 1:3160066/1‑68 (MQ=255)
ttCTGTTGCAGTTCGTCAGGCATTGCTGCCCCGCTCTGATAATGCCGGGCGTAGCGAGCGAATACCTg > 1:1281722/1‑68 (MQ=255)
ttCTGTTGCAGTTCGTCAGGCATTGCTGCCCCGCTCTGATAATGCCGGGCGTAGCGAGCGAATACCTg > 1:240332/1‑68 (MQ=255)
gCAGTTCGTCAGGCATTGCTGCCCCGCTCTGATAATGCCGGGCGTAGCGAGCGAATACCTGCGGATGc < 1:1919996/68‑1 (MQ=255)
gCAGTTCGTCAGGCATTGCTGCCCCGCTCTGATAATGCCGGGCGTAGCGAGCGAATACCTGCGGATGc < 1:2099882/68‑1 (MQ=255)
gCAGTTCGTCAGGCATTGCTGCCCCGCTCTGATAATGCCGGGCGTAGCGAGCGAATACCTGCGGATGc < 1:754375/68‑1 (MQ=255)
gCAGTTCGTCAGGCATTGCTGCCCCGCTCTGATAATGCCGGGCGTAGCGAGCGAATACCTGCGGATGc < 1:2203018/68‑1 (MQ=255)
gCAGTTCGTCAGGCATTGCTGCCCCGCTCTGATAATGCCGGGCGTAGCGAGCGAATACCTGCGGATGc < 1:2893914/68‑1 (MQ=255)
|
GCGGCGCTAAGCAGTTCGCTCATCTCATACCCTTTGTTGAACAGGCTGGCATTACGCATTTTCTGTTGCAGTTCGTCAGGCATTGCTGCCCCGCTCTGATAATGCCGGGCGTAGCGAGCGAATACCTGCGGATGC > minE/977481‑977615
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
