Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I0 R1
|
4577 |
57.4 |
3436498 |
77.7% |
2670158 |
63.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
1,157,473 |
G→T |
64.3% |
A328A (GCC→GCA) |
astA ← |
arginine succinyltransferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 1,157,473 | 0 | G | T | 64.3%
| 33.2
/ 45.4
| 56 | A328A (GCC→GCA) | astA | arginine succinyltransferase |
| Reads supporting (aligned to +/- strand): ref base G (16/4); new base T (10/26); total (26/30) |
| Fisher's exact test for biased strand distribution p-value = 2.40e-04 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TAAAGTCATGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCGGCGTGGCATTTGAGGGCATCCAGTTGTGCGGCGGTTAAAATCAAACGCTCGGTTGCCGGATCGG > minE/1157417‑1157537
|
tAAAGTGATGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCTGCGTGGCAttt < 1:356580/68‑1 (MQ=255)
tAAAGTCATGTTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCTGCGTGGCAttt < 1:2045234/68‑1 (MQ=255)
tAAAGTCATGCTGTTTTCTCCTCTGCGCTCAGGCGCACCAGACGAACGCGATCCCCTGCGTGGCAttt < 1:2624593/68‑1 (MQ=255)
tAAAGTCATGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAGCGCGATCCCCGGCGTGGCATTTg > 1:478597/1‑69 (MQ=255)
tAAAGTCATGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCTGCGTGGTAttt < 1:3265016/68‑1 (MQ=255)
tAAAGTCATGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCTGCGTGGCAttt < 1:3239964/68‑1 (MQ=255)
tAAAGTCATGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCTGCGTGGCAttt < 1:2191596/68‑1 (MQ=255)
tAAAGTCATGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCTGCGTGGCAttt < 1:237683/68‑1 (MQ=255)
tAAAGTCATGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCTGCGTGGCAttt < 1:2879339/68‑1 (MQ=255)
tAAAGTCATGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCTGCGTGGCAttt < 1:2908834/68‑1 (MQ=255)
tAAAGTCATGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCTGCGTGGCAttt < 1:3032131/68‑1 (MQ=255)
tAAAGTCATGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCTGCGTGGCAttt < 1:3196947/68‑1 (MQ=255)
tAAAGTCATGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCTGCGTGGCAttt < 1:2614296/68‑1 (MQ=255)
tAAAGTCATGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCTGCGTGGCAttt < 1:3290100/68‑1 (MQ=255)
tAAAGTCATGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCTGCGTGGCAttt < 1:724531/68‑1 (MQ=255)
tAAAGTCATGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCTGCGTGGCAttt < 1:930614/68‑1 (MQ=255)
tAAAGTCATGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCTGCGTGGCAttt < 1:954928/68‑1 (MQ=255)
tAAAGTCATGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCTGCGTGGCAttt < 1:2036183/68‑1 (MQ=255)
tAAAGTCATGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCTGCGTGGCAttt < 1:1091132/68‑1 (MQ=255)
tAAAGTCATGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCTGCGTGGCAttt < 1:1479423/68‑1 (MQ=255)
tAAAGTCATGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCTGCGTGGCAttt < 1:1969525/68‑1 (MQ=255)
tAAAGTCATGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCTGCGTGGCAttt < 1:1982042/68‑1 (MQ=255)
tAAAGTCATGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCTGCGTGGCAttt < 1:2174175/68‑1 (MQ=255)
tAAAGTCATGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCGGCGTGGCATTTg > 1:178293/1‑69 (MQ=255)
tAAAGTCATGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCGGCGTGGCATTTg > 1:3312945/1‑69 (MQ=255)
tAAAGTCATGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCGGCGTGGCATTTg > 1:1227510/1‑69 (MQ=255)
tAAAGTCATGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCGGCGTGGCATTTg > 1:2240970/1‑69 (MQ=255)
tAAAGTCATGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCGGCGTGGCATTTg > 1:3123438/1‑69 (MQ=255)
tAAAGTCATGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCGGCGTGGCATTTg > 1:835688/1‑69 (MQ=255)
tAAAGTCATGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCGGCGTGGCATTTg > 1:2884089/1‑69 (MQ=255)
tAAAGTCATGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCGGCGTGGCATTTg > 1:2442069/1‑69 (MQ=255)
aaaGTCATGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCTGCGTGGCAttt < 1:2274314/67‑1 (MQ=255)
aaaGTCATGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCTGCGTGGCAttt < 1:540475/67‑1 (MQ=255)
aaGTCATGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCGGCGTGGCATTTTAg < 1:2536449/69‑1 (MQ=255)
aaGTCATGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCGGCGTGGCATTTGAg < 1:567567/69‑1 (MQ=255)
aaGTCATGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCGGCGTGGCATTTGAg > 1:541908/1‑69 (MQ=255)
aaGTCATGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCGGCGTGGCATTTGAg > 1:457720/1‑69 (MQ=255)
aaGTCATGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCGGCGTGGCATTTGAg > 1:3311987/1‑69 (MQ=255)
aaGTCATGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCGGCGTGGCATTTGAg < 1:2294984/69‑1 (MQ=255)
aaGTCATGCTGTTTTCTCCTCTGCGCACAGGCGCACAAGACGAACGCGATCCCCGGCGTGGCATTTGAg > 1:2536439/1‑69 (MQ=255)
tCATGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCTGCGTGGCAttt < 1:1068686/63‑1 (MQ=255)
aTGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCTGCGTGGCATTTGAGGGCa > 1:1124495/1‑68 (MQ=255)
aTGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCTGCGTGGCATTTGAGGGCa > 1:3278509/1‑68 (MQ=255)
aTGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCTGCGTGGCATTTGAGGGCa > 1:41991/1‑68 (MQ=255)
aTGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCTGCGTGGCATTTGAGGGCa > 1:1404043/1‑68 (MQ=255)
aTGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCTGCGTGGCATTTGAGGGCa > 1:2340843/1‑68 (MQ=255)
aTGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCTGCGTGGCATTTGAGGGCa > 1:1577187/1‑68 (MQ=255)
aTGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCTGCGTGGCATTTGAGGGCa > 1:1611620/1‑68 (MQ=255)
aTGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCTGCGTGGCATTTGAGGGCa > 1:1909068/1‑68 (MQ=255)
aTGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCTGCGTGGCATTTGAGGGCa > 1:2371967/1‑68 (MQ=255)
aTGCTGTTTTCTCCTCTGCGCACAGGCGCAACAGACGAACGCGATCCCCTGCGTGGCATTTGAGGGc > 1:3340388/1‑67 (MQ=255)
cTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCGGCGTGGCATTTGAGGGCATCCa > 1:44908/1‑69 (MQ=255)
cTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCGGCGTGGCATTTGAGGGCATCCa > 1:3053823/1‑69 (MQ=255)
ttCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCGGCGTGGCATTTGAGGGCATCCAGTtgt > 1:1364296/1‑69 (MQ=255)
tGCGCACAGGCGCACCAGACGAACGCGATCCCCTGCGTGGCAttt < 1:1835690/45‑1 (MQ=255)
ccccGGCGTGGCATTTGAGGGCATCCAGTTGTGCGGCGGTTAAAATCAAACGCTCGGTTGCCGGATCgg < 1:1218562/69‑1 (MQ=255)
|
TAAAGTCATGCTGTTTTCTCCTCTGCGCACAGGCGCACCAGACGAACGCGATCCCCGGCGTGGCATTTGAGGGCATCCAGTTGTGCGGCGGTTAAAATCAAACGCTCGGTTGCCGGATCGG > minE/1157417‑1157537
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
