Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I0 R1
|
4577 |
57.4 |
3436498 |
77.7% |
2670158 |
63.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
1,309,908 |
A→G |
39.6% |
L28L (CTT→CTC) |
yefM ← |
antitoxin of the YoeB‑YefM toxin‑antitoxin system |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 1,309,908 | 0 | A | G | 39.6%
| 41.1
/ 66.8
| 96 | L28L (CTT→CTC) | yefM | antitoxin of the YoeB‑YefM toxin‑antitoxin system |
| Reads supporting (aligned to +/- strand): ref base A (33/25); new base G (15/23); total (48/48) |
| Fisher's exact test for biased strand distribution p-value = 1.44e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 102 total aligned reads displayed.
TCTTCCAGCGAGTTGTATTCTTCGAGTGACATCAGAACACAAGCCTCTCCATTCTGGCGAGTAATAAGGATCGGGGCATGATCTTCAACGGCTTTCATCATTGTTGCCGACAAATTCTGACGCGCTTCGCTGT > minE/1309843‑1309975
|
tctTCCAGCGAGTTGTATTCTTCGAGTGACATCAGAACACAAGCCTCTCCATTCTGGCGAGTAATAAgg > 1:479931/1‑69 (MQ=255)
gTTGTATTCTTCGAGTGACATCAGAACACAAGCCTCTCCATTCTGGCGAGTAATAAGGATCGGGGCATg < 1:831147/69‑1 (MQ=255)
gTTGTATTCTTCGAGTGACATCAGAACACAAGCCTCTCCATTCTGGCGAGTAATAAGGATCGGGGCATg < 1:3076446/69‑1 (MQ=255)
ttcttcGAGTGACATCAGAACACAAGCCTCTCCATTCTGGCGAGTAATAAGGATCGGGGCATGATCTTc < 1:2020499/69‑1 (MQ=255)
ttcttcGAGTGACATCAGAACACAAGCCTCTCCATTCTGGCGAGTAATAAGGATCGGGGCATGATCTTc < 1:1258091/69‑1 (MQ=255)
ttcttcGAGTGACATCAGAACACAAGCCTCTCCATTCTGGCGAGTAATAAGGATCGGGGCATGATCTTc < 1:513526/69‑1 (MQ=255)
ttcttcGAGTGACATCAGAACACAAGCCTCTCCATTCTGGCGAGTAATAAGGATCGGGGCATGATCTTc < 1:2778940/69‑1 (MQ=255)
ttcttcGAGTGACATCAGAACACAAGCCTCTCCATTCTGGCGAGTAATAAGGATCGGGGCATGATCTTc < 1:1390640/69‑1 (MQ=255)
ttcttcGAGTGACATCAGAACACAAGCCTCTCCATTCTGGCGAGTAATAAGGATCGGGGCATGATCTTc < 1:248848/69‑1 (MQ=255)
ttcttcGAGTGACATCAGAACACAAGCCTCTCCATTCTGGCGAGTAATAAGGATCGGGGCATGATCTTc < 1:358893/69‑1 (MQ=255)
ttcttcGAGTGACATCAGAACACAAGCCTCTCCATTCTGACGAGTAATGAGGAt < 1:1708820/54‑1 (MQ=255)
ttcttcGAGTGACATCAGAACACAAGCCTCTCCATTCTGACGAGTAATGAGGAt < 1:3033897/54‑1 (MQ=255)
ttcttcGAGTGACATCAGAACACAAGCCTCTCCATTCTGACGAGTAATGAGGAt < 1:2856189/54‑1 (MQ=255)
ttcttcGAGTGACATCAGAACACAAGCCTCTCCATTCTGACGAGTAATGAGGAt < 1:1791315/54‑1 (MQ=255)
ttcttcGAGTGACATCAGAACACAAGCCTCTCCATTCTGACGAGTAATGAGGAt < 1:2486720/54‑1 (MQ=255)
ttcttcGAGTGACATCAGAACACAAGCCTCTCCATTCTGACGAGTAATGAGGAt < 1:1975103/54‑1 (MQ=255)
ttcttcGAGTGACATCAGAACACAAGCCTCTCCATTCTGACGAGTAATGAGGAt < 1:2481596/54‑1 (MQ=255)
ttcttcGAGTGACATCAGAACACAAGCCTCTCCATTCTGACGAGTAATGAGGAt < 1:1993968/54‑1 (MQ=255)
ttcttcGAGTGACATCAGAACACAAGCCTCTCCATTCTGACGAGTAATGAGGAt < 1:2360386/54‑1 (MQ=255)
ttcttcGAGTGACATCAGAACACAAGCCTCTCCATTCTGACGAGTAATGAGGAt < 1:2117675/54‑1 (MQ=255)
ttcttcGAGTGACATCAGAACACAAGCCTCTCCATTCTGACGAGTAATGAGGAt < 1:2896075/54‑1 (MQ=255)
ttcttcGAGTGACATCAGAACACAAGCCTCTCCATTCTGACGAGTAATGAGGAt < 1:1639345/54‑1 (MQ=255)
ttcttcGAGTGACATCAGAACACAAGCCTCTCCATTCTGACGAGTAATGAGGAt < 1:1622221/54‑1 (MQ=255)
ttcttcGAGTGACATCAGAACACAAGCCTCTCCATTCTGACGAGTAATGAGGAt < 1:3136299/54‑1 (MQ=255)
ttcttcGAGTGACATCAGAACACAAGCCTCTCCATTCTGACGAGTAATGAGGAt < 1:431734/54‑1 (MQ=255)
ttcttcGAGTGACATCAGAACACAAGCCTCTCCATTCTGACGAGTAATGAGGAt < 1:1383413/54‑1 (MQ=255)
ttcttcGAGTGACATCAGAACACAAGCCTCTCCATTCTGACGAGTAATGAGGAt < 1:491259/54‑1 (MQ=255)
ttcttcGAGTGACATCAGAACACAAGCCTCTCCATTCTGACGAGTAATGAGGAt < 1:618697/54‑1 (MQ=255)
ttcttcGAGTGACATCAGAACACAAGCCTCTCCATTCTGACGAGTAATGAGGAt < 1:1222331/54‑1 (MQ=255)
ttcttcGAGTGACATCAGAACACAAGCCTCTCCATTCTGACGAGTAATGAGGAt < 1:1132205/54‑1 (MQ=255)
ttcttcGAGTGACATCAGAACACAAGCCTCTCCATTCTGACGAGTAATGAGGAt < 1:961112/54‑1 (MQ=255)
tcttcGAGTGACATCAGAACACAAGCCTCTCCATTCTGGCGAGTAATAAGGATCGGGGCATGATCTTc < 1:2004000/68‑1 (MQ=255)
tcttcGAGTGACATCAGAACACAAGACTCTCCATTCTGACGAGTAATGAGGAt < 1:2520402/53‑1 (MQ=255)
cttcGAGTGACATCAGAACACAAGCCTCTCCATTCTGGCGAGTAATAAgg > 1:2453772/1‑50 (MQ=255)
cttcGAGTGACATCAGAACACAAGCCTCTCCATTCTGGCGAGTAATAAgg > 1:582899/1‑50 (MQ=255)
cttcGAGTGACATCAGAACACAAGCCTCTCCATTCTGGCGAGTAATAAgg > 1:601417/1‑50 (MQ=255)
ttcGAGTGACATCAGAACACAAGCCTCTCCATTCTGACGAGTAATGAGGAt < 1:3110183/51‑1 (MQ=255)
tGACATCAGAACACAAGCCTCTCCATTCTGGCGAGTAATAAGGATCGGGGCATg < 1:3332261/54‑1 (MQ=255)
tGACATCAGAACACAAGCCTCTCCATTCTGGCGAGTAATAAGGATCGGGGCATg < 1:1739227/54‑1 (MQ=255)
gACATCAGAACACAAGCCTCTCCATTCTGGCGAGTAATAAGGATCGGGGCATg < 1:2430894/53‑1 (MQ=255)
gACATCAGAACACAAGCCTCTCCATTCTGGCGAGTAATAAGGATCGGGGCATGATCTTCAACGGCTTtc > 1:1588838/1‑69 (MQ=255)
aTCAGAACACAAGCCTCTCCATTCTGGCGAGTAATAAGGATCGGGGCATGATCTTCAACGGCTTtcat < 1:2830946/68‑1 (MQ=255)
aTCAGAACACAAGCCTCTCCATTCTGGCGAGTAATAAGGATCGGGGCATGATCTTCAACGGCTTtcat < 1:2116336/68‑1 (MQ=255)
aTCAGAACACAAGCCTCTCCATTCTGGCGAGTAATAAGGATCGGGGCATGATCTTCAACGGCTTtcat < 1:300450/68‑1 (MQ=255)
aTCAGAACACAAGCCTCTCCATTCTGGCGAGTAATAAGGATCGGGGCATGATCTTCAACGGCTTtcat < 1:3043489/68‑1 (MQ=255)
aTCAGAACACAAGCCTCTCCATTCTGGCGAGTAATAAGGATCGGGGCATGATCTTCAACGGCTTtcat < 1:2787354/68‑1 (MQ=255)
cAGAACACAAGCCTCTCCATTCTGGCGAGTAATAAGGATCGGGGCATGATCTTCAACGGCTTTcatcat > 1:51856/1‑69 (MQ=255)
cAGAACACAAGCCTCTCCATTCTGGCGAGTAATAAGGATCGGGGCATGATCTTCAACGGCTTTcatcat > 1:480263/1‑69 (MQ=255)
cAGAACACAAGCCTCTCCATTCTGGCGAGTAATAAGGATCGGGGCATGATCTTCAACGGCTTTcatcat > 1:2311045/1‑69 (MQ=255)
cAGAACACAAGCCTCTCCATTCTGACTAGTAATGAGGa > 1:892967/1‑38 (MQ=255)
cAGAACACAAGCCTCTCCATTCTGACGAGTAATGAGGATCGGGGCATGATCTTCAACGGCTTtcatca > 1:2607878/1‑68 (MQ=255)
cAGAACACAAGCCTCTCCATTCTGACGAGTAATGAGGATCGGGGCATGATCTTCAACGGCTTTcatcat > 1:1459608/1‑69 (MQ=255)
cAGAACACAAGCCTCTCCATTCTGACGAGTAATGAGGATCGGGGCATGATCTTCAACGGCTTTcatcat > 1:140894/1‑69 (MQ=255)
cAGAACACAAGCCTCTCCATTCTGACGAGTAATGAGGATCGGGGCATGATCTTCAACGGCTTTcatcat > 1:453807/1‑69 (MQ=255)
cAGAACACAAGCCTCTCCATTCTGACGAGTAATGAGGATCGGGGCATGATCTTCAACGGCTTTcatcat > 1:1700828/1‑69 (MQ=255)
cAGAACACAAGCCTCTCCATTCTGACGAGTAATGAGGATCGGGGCATGATCTTCAACGGCTTTcatcat > 1:618862/1‑69 (MQ=255)
cAGAACACAAGCCTCTCCATTCTGACGAGTAATGAGGATCGGGGCATGATCTTCAACGGCTTTcatcat > 1:701266/1‑69 (MQ=255)
cAGAACACAAGCCTCTCCATTCTGACGAGTAATGAGGATCGGGGCATGATCTTCAACGGCTTTcatcat > 1:109188/1‑69 (MQ=255)
cAGAACACAAGCCTCTCCATTCTGACGAGTAATGAGGATCGGGGCATGATCTTCAACGGCTTTcatcat > 1:2161010/1‑69 (MQ=255)
cAGAACACAAGCCTCTCCATTCTGACGAGTAATGAGGATCGGGGCATGATCTTCAACGGCTTTcatcat > 1:244006/1‑69 (MQ=255)
cAGAACACAAGCCTCTCCATTCTGACGAGTAATGAGGATCGGGGCATGATCTTCAACGGCTTTcatcat > 1:2388687/1‑69 (MQ=255)
cAGAACACAAGCCTCTCCATTCTGACGAGTAATGAGGATCGGGGCATGATCTTCAACGGCTTTcatcat > 1:2472689/1‑69 (MQ=255)
cAGAACACAAGCCTCTCCATTCTGACGAGTAATGAGGATCGGGGCATGATCTTCAACGGCTTTcatcat > 1:1960799/1‑69 (MQ=255)
cAGAACACAAGCCTCTCCATTCTGACGAGTAATGAGGATCGGGGCATGATCTTCAACGGCTTTcatcat > 1:1024826/1‑69 (MQ=255)
aGAACACAAGCCTCTCCATTCTGGCGAGTAATAAGGATCTGGGCATGATCTTCAACGGCTTTCATCAtt > 1:2380576/1‑69 (MQ=255)
aGAACACAAGCCTCTCCATTCTGGCGAGTAATAAGGATCGGGGCATGATCTTc > 1:3303893/1‑53 (MQ=255)
aGAACACAAGCCTCTCCATTCTGGCGAGTAATAAGGATCGGGGCATGATCTTc > 1:3147460/1‑53 (MQ=255)
aGAACACAAGCCTCTCCATTCTGGCGAGTAATAAGGATCGGGGCATGATCTTc > 1:2492800/1‑53 (MQ=255)
aGAACACAAGCCTCTCCATTCTGGCGAGTAATAAGGATCGGGGCATGATCTTc > 1:129262/1‑53 (MQ=255)
aGAACACAAGCCTCTCCATTCTGGCGAGTAATAAGGATCGGGGCATGATCTTc > 1:2407530/1‑53 (MQ=255)
aGAACACAAGCCTCTCCATTCTGGCGAGTAATAAGGATCGGGGCATGATCTTc > 1:719827/1‑53 (MQ=255)
aGAACACAAGCCTCTCCATTCTGGCGAGTAATAAGGATCGGGGCATGATCTTc > 1:2695565/1‑53 (MQ=255)
aGAACACAAGCCTCTCCATTCTGGCGAGTAATAAGGATCGGGGCATGATCTTc > 1:2713948/1‑53 (MQ=255)
aGAACACAAGCCTCTCCATTCTGGCGAGTAATAAGGATCGGGGCATGATCTTc > 1:955678/1‑53 (MQ=255)
aGAACACAAGCCTCTCCATTCTGGCGAGTAATAAGGATCGGGGCATGATCTTCAACGGCTTTCATCAtt > 1:1792158/1‑69 (MQ=255)
aGAACACAAGCCTCTCCATTCTGGCGAGTAATAAGGATCGGGGCATGATCTTCAACGGCTTTCATCAtt > 1:140158/1‑69 (MQ=255)
aGAACACAAGCCTCTCCATTCTGGCGAGTAATAAGGATCGGGGCATGATCTTCAACGGCTTTCATCAtt > 1:2390317/1‑69 (MQ=255)
aGAACACAAGCCTCTCCATTCTGGCGAGTAATAAGGATCGGGGCATGATCTTCAACGGCTTTCATCAtt > 1:1233976/1‑69 (MQ=255)
aGAACACAAGCCTCTCCATTCTGGCGAGTAATAAGGATCGGGGCATGATCTTCAACGGCTTTCATCAtt > 1:1224506/1‑69 (MQ=255)
aGAACACAAGCCTCTCCATTCTGGCGAGTAATAAGGATCGGGGCATGATCTTCAACGGCTTTCATCAtt > 1:388725/1‑69 (MQ=255)
aGAACACAAGCCTCTCCATTCTGGCGAGTAATAAGGATCGGGGCATGATCTTCAACGGCTTTCATCAtt > 1:2620671/1‑69 (MQ=255)
cacaAGCCTCTCCATTCTGGCGAGTAATAAGGATCGGGGCATg < 1:1513009/43‑1 (MQ=255)
cacaAGCCTCTCCATTCTGGCGAGTAATAAGGATCGGGGCATg < 1:893917/43‑1 (MQ=255)
cacaAGCCTCTCCATTCTGGCGAGTAATAAGGATCGGGGCATg < 1:643581/43‑1 (MQ=255)
cacaAGCCTCTCCATTCTGGCGAGTAATAAGGATCGGGGCATg < 1:2944370/43‑1 (MQ=255)
cacaAGCCTCTCCATTCTGGCGAGTAATAAGGATCGGGGCATg < 1:850317/43‑1 (MQ=255)
cacaAGCCTCTCCATTCTGGCGAGTAATAAGGATCGGGGCATGATCTTCAACGGCTTTCATCAttgttg > 1:1350961/1‑69 (MQ=255)
cacaAGCCTCTCCATTCTGGCGAGAAATAAGGATCGGGGCATg < 1:139670/43‑1 (MQ=255)
caAGGCTCTCCATTCTGGCGAGTAATAAGGATCGGGGCATGATCTTCAACGGCTTTCATCAttg > 1:1854201/1‑64 (MQ=255)
caAGCCTCTCCATTCTGGCGAGTAATAAGGATCGGGGCATg < 1:3046661/41‑1 (MQ=255)
caAGCCTCTCCATTCTGGCGAGTAATAAGGATCGGGGCATGATCTTCAACGGCTTTCATCATTGTTGcc > 1:3360290/1‑69 (MQ=255)
caAGCCTCTCCATTCTGGCGAGTAATAAGGATCGGGGCATGATCTTCAACGGCTTTCATCATTGTTGcc > 1:212194/1‑69 (MQ=255)
caAGCCTCTCCATTCTGGCGAGTAATAAGGATCGGGGCATGATCTTCAACGGCTTTCATCATTGTTGcc > 1:2567617/1‑69 (MQ=255)
caAGCCTCTCCATTCTGGCGAGTAATAAGGATCGGGGCATGATCTTCAACGGCTTTCATCATTGTTGc > 1:2662316/1‑68 (MQ=255)
ataaGGATCGGGGCATGATCTTCAACGGCTTTCATCATTGTTGCCGACAAATTCTGACGCGCTTCGc > 1:1987313/1‑67 (MQ=255)
ataaGGATCGGGGCATGATCTTCAACGGCTTTCATCATTGTTGCCGACAAATTCTGACGCGCTTCGc > 1:2939327/1‑67 (MQ=255)
ataaGGATCGGGGCATGATCTTCAACGGCTTTCATCATTGTTGCCGACAAATTCTGACGCGCTTCGc > 1:2431368/1‑67 (MQ=255)
ataaGGATCGGGGCATGATCTTCAACGGCTTTCATCATTGTTGCCGACAAAATCTGACGCGCTTc > 1:2729914/1‑65 (MQ=255)
aaGGATCGGGGCATGATCTTCAACGGCTTTCATCATTGTTGCCGACAAATTCTGACGCGCTTCGCTGt < 1:301622/68‑1 (MQ=255)
aaGGATCGGGGCATGATCTTCAACGGCTTTCATCATTGTTGCCGACAAATTCAGACGCGCTTCGCTGt < 1:2726915/68‑1 (MQ=255)
|
TCTTCCAGCGAGTTGTATTCTTCGAGTGACATCAGAACACAAGCCTCTCCATTCTGGCGAGTAATAAGGATCGGGGCATGATCTTCAACGGCTTTCATCATTGTTGCCGACAAATTCTGACGCGCTTCGCTGT > minE/1309843‑1309975
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
