Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I0 R1
|
4577 |
57.4 |
3436498 |
77.7% |
2670158 |
63.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
1,320,248 |
A→G |
60.8% |
A433A (GCT→GCC) |
gnd ← |
gluconate‑6‑phosphate dehydrogenase, decarboxylating |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 1,320,248 | 0 | A | G | 60.8%
| 38.4
/ 53.1
| 79 | A433A (GCT→GCC) | gnd | gluconate‑6‑phosphate dehydrogenase, decarboxylating |
| Reads supporting (aligned to +/- strand): ref base A (10/21); new base G (27/21); total (37/42) |
| Fisher's exact test for biased strand distribution p-value = 4.16e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.37e-01 |
CGCACCAAAATAGTCACGCTGTGCCTGGATCAGGTTCGCAGGCAGAACAGCAGCACGGTAGCTGTCGTAATAGGCAACCGCTGCGGAGAAGGTCGGAACCGGAATACCGTTCTG > minE/1320197‑1320310
|
cgcACCAAAATAGTCACGCTGTGCCTGGATCAGGTTCGCAGGCAGAACAGCAGCACGGTAGCTGTCGt > 1:2972426/1‑68 (MQ=255)
cgcACCAAAATAGTCACGCTGTGCCTGGATCAGGTTCGCAGGCAGAACAGCAGCACGGTAGCTGTCGt > 1:1888759/1‑68 (MQ=255)
cgcACCAAAATAGTCACGCTGTGCCTGGATCAGGTTCGCAGGCAGAACAGCAGCACGGTAGCTGTCGt > 1:2094226/1‑68 (MQ=255)
cgcACCAAAATAGTCACGCTGTGCCTGGATCAGGTTCGCAGGCAGAACAGCAGCACGGTAGCTGTCGt > 1:2286165/1‑68 (MQ=255)
cgcACCAAAATAGTCACGCTGTGCCTGGATCAGGTTCGCAGGCAGAACAGCAGCACGGTAGCTGTCGt > 1:2300729/1‑68 (MQ=255)
cgcACCAAAATAGTCACGCTGTGCCTGGATCAGGTTCGCAGGCAGAACAGCAGCACGGTAGCTGTCGt > 1:163925/1‑68 (MQ=255)
cgcACCAAAATAGTCACGCTGTGCCTGGATCAGGTTCGCAGGCAGAACAGCAGCACGGTAGCTGTCGt > 1:2656958/1‑68 (MQ=255)
cgcACCAAAATAGTCACGCTGTGCCTGGATCAGGTTCGCAGGCAGAACAGCAGCACGGTAGCTGTCGt > 1:2686574/1‑68 (MQ=255)
cgcACCAAAATAGTCACGCTGTGCCTGGATCAGGTTCGCAGGCAGAACAGCAGCACGGTAGCTGTCGt > 1:1325899/1‑68 (MQ=255)
cgcACCAAAATAGTCACGCTGTGCCTGGATCAGGTTCGCAGGCAGAACAGCAGCACGGTAGCTGTCGt > 1:1103941/1‑68 (MQ=255)
cACGCTGTGCCTGGATCATGTTCGCAGGCAGAACAGCGGCACGGTAGCTATCGTAATAGGCAACCGcag < 1:472564/69‑3 (MQ=255)
cACGCTGTGCCTGGATCAGGTTCGCAGGCAGAACAGCGGCACGGTAGCTATCGTAATAGGCAACCGcag < 1:367967/69‑3 (MQ=255)
cACGCTGTGCCTGGATCAGGTTCGCAGGCAGAACAGCGGCACGGTAGCTATCGTAATAGGCAACCGcag < 1:3162677/69‑3 (MQ=255)
cACGCTGTGCCTGGATCAGGTTCGCAGGCAGAACAGCGGCACGGTAGCTATCGTAATAGGCAACCGcag < 1:1075354/69‑3 (MQ=255)
cACGCTGTGCCTGGATCAGGTTCGCAGGCAGAACAGCGGCACGGTAGCTATCGTAATAGGCAACCGcag < 1:289854/69‑3 (MQ=255)
cACGCTGTGCCTGGATCAGGTTCGCAGGCAGAACAGCGGCACGGTAGCTATCGTAATAGGCAACCGcag < 1:278231/69‑3 (MQ=255)
cACGCTGTGCCTGGATCAGGTTCGCAGGCAGAACAGCGGCACGGTAGCTATCGTAATAGGCAACCGcag < 1:586664/69‑3 (MQ=255)
cACGCTGTGCCTGGATCAGGTTCGCAGGCAGAACAGCGGCACGGTAGCTATCGTAATAGGCAACCGcag < 1:689486/69‑3 (MQ=255)
cACGCTGTGCCTGGATCAGGTTCGCAGGCAGAACAGCGGCACGGTAGCTATCGTAATAGGCAACCGcag < 1:818907/69‑3 (MQ=255)
cACGCTGTGCCTGGATCAGGTTCGCAGGCAGAACAGCGGCACGGTAGCTATCGTAATAGGCAACCGcag < 1:839867/69‑3 (MQ=255)
cACGCTGTGCCTGGATCAGGTTCGCAGGCAGAACAGCGGCACGGTAGCTATCGTAATAGGCAACCGcag < 1:2103559/69‑3 (MQ=255)
cACGCTGTGCCTGGATCAGGTTCGCAGGCAGAACAGCGGCACGGTAGCTATCGTAATAGGCAACCGcag < 1:2067971/69‑3 (MQ=255)
cACGCTGTGCCTGGATCAGGTTCGCAGGCAGAACAGCGGCACGGTAGCTATCGTAATAGGCAACCGcag < 1:905348/69‑3 (MQ=255)
cACGCTGTGCCTGGATCAGGTTCGCAGGCAGAACAGCGGCACGGTAGCTATCGTAATAGGCAACCGcag < 1:1628689/69‑3 (MQ=255)
cACGCTGTGCCTGGATCAGGTTCGCAGGCAGAACAGCGGCACGGTAGCTATCGTAATAGGCAACCGcag < 1:1110614/69‑3 (MQ=255)
cACGCTGTGCCTGGATCAGGTTCGCAGGCAGAACAGCGGCACGGTAGCTATCGTAATAGGCAACCGcag < 1:1147302/69‑3 (MQ=255)
cACGCTGTGCCTGGATCAGGTTCGCAGGCAGAACAGCGGCACGGTAGCTATCGTAATAGGCAACCGcag < 1:1321262/69‑3 (MQ=255)
cACGCTGTGCCTGGATCAGGTTCGCAGGCAGAACAGCGGCACGGTAGCTATCGTAATAGGCAACCGcag < 1:1810862/69‑3 (MQ=255)
cACGCTGTGCCTGGATCAGGTTCGCAGGCAGAACAGCGGCACGGTAGCTATCGTAATAGGCAACCGcag < 1:1304321/69‑3 (MQ=255)
aCGCTGTGCCTGGATCAGGTTCGCAGGCAGAACAGCGGCACGGTAGCTATCGTAATAGGCAACCGcag < 1:1356613/68‑3 (MQ=255)
aCGCTGTGCCTGGATCAGGTTCGCAGGCAGAACAGCGGCACGGTAGCTATCGTAATAGGCAACCGcag < 1:250438/68‑3 (MQ=255)
tgtgCCTGGATCAGGTTCGCAGGCAGAACAGCAGCACGGTAGCTGTCGTAATAGGCAACCGCTGCGgag < 1:2073029/69‑1 (MQ=255)
tCAGGTTCGCAGGCAGAACAGCAGCACGGTAGCTGTCGTAATAGGCAACCGCTGCGGAGAAGTTCGGa < 1:1428196/68‑1 (MQ=255)
tCAGGTTCGCAGGCAGAACAGCAGCACGGTAGCTGTCGTAATAGGCAACCGCTGCGGAGAAGGTCGGa < 1:616646/68‑1 (MQ=255)
tCAGGTTCGCAGGCAGAACAGCAGCACGGTAGCTGTCGTAATAGGCAACCGCTGCGGAGAAGGTCGGa < 1:24010/68‑1 (MQ=255)
tCAGGTTCGCAGGCAGAACAGCAGCACGGTAGCTGTCGTAATAGGCAACCGCTGCGGAGAAGGTCGGa < 1:2968685/68‑1 (MQ=255)
tCAGGTTCGCAGGCAGAACAGCAGCACGGTAGCTGTCGTAATAGGCAACCGCTGCGGAGAAGGTCGGa < 1:2919878/68‑1 (MQ=255)
gTTCGCAGGCAGAACAGCAGCACGGTAGCTGTCGTAATAGGCAACCGCTGCGGAGAAGGTCGGAACCgg < 1:1698225/69‑1 (MQ=255)
gTTCGCAGGCAGAACAGCAGCACGGTAGCTGTCGTAATAGGCAACCGCTGCGGAGAAGGTCGGAACCgg < 1:2978700/69‑1 (MQ=255)
gTTCGCAGGCAGAACAGCAGCACGGTAGCTGTCGTAATAGGCAACCGCTGCGGAGAAGGTCGGAACCgg < 1:2401741/69‑1 (MQ=255)
gTTCGCAGGCAGAACAGCAGCACGGTAGCTGTCGTAATAGGCAACCGCTGCGGAGAAGGTCGGAACCgg < 1:744317/69‑1 (MQ=255)
gTTCGCAGGCAGAACAGCAGCACGGTAGCTGTCGTAATAGGCAACCGCTGCGGAGAAGGTCGGAACCgg < 1:1619640/69‑1 (MQ=255)
gTTCGCAGGCAGAACAGCAGCACGGTAGCTGTCGTAATAGGCAACCGCTGCGGAGAAGGTCGGAACCgg < 1:994640/69‑1 (MQ=255)
ggcagAACAGCGGCACGGTAGCTATCGTAATAGGCATCCGCAGCGGCGAAGGTCGGAAc > 1:1393658/1‑59 (MQ=255)
ggcagAACAGCGGCACGGTAGCTATCGTAATAGGCACCCGCAGCGGCGAAGGTCGGAAc > 1:2496537/1‑59 (MQ=255)
ggcagAACAGCGGCACGGTAGCTATCGTAATAGGCAACCGCAGCGGCGAAGGTCGGAAc > 1:357020/1‑59 (MQ=255)
ggcagAACAGCGGCACGGTAGCTATCGTAATAGGCAACCGCAGCGGCGAAGGTCGGAAc > 1:1954267/1‑59 (MQ=255)
ggcagAACAGCGGCACGGTAGCTATCGTAATAGGCAACCGCAGCGGCGAAGGTCGGAAc > 1:969489/1‑59 (MQ=255)
ggcagAACAGCGGCACGGTAGCTATCGTAATAGGCAACCGCAGCGGCGAAGGTCGGAAc > 1:2010223/1‑59 (MQ=255)
ggcagAACAGCGGCACGGTAGCTATCGTAATAGGCAACCGCAGCGGCGAAGGTCGGAAc > 1:835634/1‑59 (MQ=255)
ggcagAACAGCGGCACGGTAGCTATCGTAATAGGCAACCGCAGCGGCGAAGGTCGGAAc > 1:2028392/1‑59 (MQ=255)
ggcagAACAGCGGCACGGTAGCTATCGTAATAGGCAACCGCAGCGGCGAAGGTCGGAAc > 1:75876/1‑59 (MQ=255)
ggcagAACAGCGGCACGGTAGCTATCGTAATAGGCAACCGCAGCGGCGAAGGTCGGAAc > 1:1217372/1‑59 (MQ=255)
ggcagAACAGCGGCACGGTAGCTATCGTAATAGGCAACCGCAGCGGCGAAGGTCGGAAc > 1:2082954/1‑59 (MQ=255)
ggcagAACAGCGGCACGGTAGCTATCGTAATAGGCAACCGCAGCGGCGAAGGTCGGAAc > 1:478607/1‑59 (MQ=255)
ggcagAACAGCGGCACGGTAGCTATCGTAATAGGCAACCGCAGCGGCGAAGGTCGGAAc > 1:131263/1‑59 (MQ=255)
ggcagAACAGCGGCACGGTAGCTATCGTAATAGGCAACCGCAGCGGCGAAGGTCGGAAc > 1:460937/1‑59 (MQ=255)
ggcagAACAGCGGCACGGTAGCTATCGTAATAGGCAACCGCAGCGGCGAAGGTCGGAAc > 1:376779/1‑59 (MQ=255)
ggcagAACAGCGGCACGGTAGCTATCGTAATAGGCAACCGCAGCGGCGAAGGTCGGAAc > 1:2142981/1‑59 (MQ=255)
ggcagAACAGCGGCACGGTAGCTATCGTAATAGGCAACCGCAGCGGCGAAGGTCGGAAc > 1:3302517/1‑59 (MQ=255)
ggcagAACAGCGGCACGGTAGCTATCGTAATAGGCAACCGCAGCGGCGAAGGTCGGAAc > 1:2690538/1‑59 (MQ=255)
ggcagAACAGCGGCACGGTAGCTATCGTAATAGGCAACCGCAGCGGCGAAGGTCGGAAc > 1:2798566/1‑59 (MQ=255)
ggcagAACAGCGGCACGGTAGCTATCGTAATAGGCAACCGCAGCGGCGAAGGTCGGAAc > 1:2866260/1‑59 (MQ=255)
ggcagAACAGCGGCACGGTAGCTATCGTAATAGGCAACCGCAGCGGCGAAGGTCGGAAc > 1:3212671/1‑59 (MQ=255)
ggcagAACAGCGGCACGGTAGCTATCGTAATAGGCAACCGCAGCGGCGAAGGTCGGAAc > 1:2908016/1‑59 (MQ=255)
ggcagAACAGCGGCACGGTAGCTATCGTAATAGGCAACCGCAGCGGCGAAGGTCGGAAc > 1:2987697/1‑59 (MQ=255)
ggcagAACAGCGGCACGGTAGCTATCGTAATAGGCAACCGCAGCGGCGAAGGTCGGAAc > 1:3243763/1‑59 (MQ=255)
ggcagAACAGCGGCACGGTAGCTATCGTAATAGGCAACCGCAGCGGCGAAGGTCGGAAc > 1:1940766/1‑59 (MQ=255)
ggcagAACAGCGGCACGGTACCTATCGTAATAGGCAACCGCAGCGGCGAAGGTCGGAAc > 1:623894/1‑59 (MQ=255)
ggcagAACAGCAGCACGGTAGCTGTCGTAATAGGCAACCGCTGCGGAGAAGGTCGGAACCGGAATACCg < 1:2471536/69‑1 (MQ=255)
ggcagAACAGCAGCACGGTAGCTGTCGTAATAGGCAACCGCTGCGGAGAAGGTCGGAACCGGAATACCg < 1:874966/69‑1 (MQ=255)
ggcagAACAGCAGCACGGTAGCTGTCGTAATAGGCAACCGCTGCGGAGAAGGTCGGAACCGGAATACCg < 1:1844395/69‑1 (MQ=255)
ggcagAACAGCAGCACGGTAGCTGTCGTAATAGGCAACCGCTGCGGAGAAGGTCGGAACCGGAATACCg < 1:1836601/69‑1 (MQ=255)
ggcagAACAGCAGCACGGTAGCTGTCGTAATAGGCAACCGCTGCGGAGAAGGTCGGAACCGGAATACCg < 1:3431120/69‑1 (MQ=255)
ggcacAACAGCGGCACGGTAGCTATCGTAATAGGCAACCGCAGCGGCGAAGGTCGGAAc > 1:3300472/1‑59 (MQ=255)
aaCAGCAGCACGGTAGCTGTCGTAATAGGCAACCGCTGCGGAGAAGGTCGGAACCGGAATACCGTTCTg < 1:2655768/69‑1 (MQ=255)
aaCAGCAGCACGGTAGCTGTCGTAATAGGCAACCGCTGCGGAGAAGGTCGGAACCGGAATACCGTTCTg < 1:1594726/69‑1 (MQ=255)
aaCAGCAGCACGGTAGCTGTCGTAATAGGCAACCGCTGCGGAGAAGGTCGGAACCGGAATACCGTTCTg < 1:3227149/69‑1 (MQ=255)
aaCAGCAGCACGGTAGCTGTCGTAATAGGCAACCGCTGCGGAGAAGGTCGGAACCGGAATACCGTTCTg < 1:1042067/69‑1 (MQ=255)
cagcagCACGGTAGCTGTCGTAATAGGCAACCGCTGCGGAGAAGGTCGGAACCgg < 1:2367945/55‑1 (MQ=255)
cagcagCACGGTAGCTGTCGTAATAGGCAACCGCTGCGGAGAAGGTCGGAACCgg < 1:425691/55‑1 (MQ=255)
cagcagCACGGTAGCTGTCGTAATAGGCAACCGCTGCGGAGAAGGTCGGAACCgg < 1:170788/55‑1 (MQ=255)
cagcagCACGGTAGCTGTCGTAATAGGCAACCGCTGCGGAGAAGGTCGGAACCgg < 1:716386/55‑1 (MQ=255)
cagcagCACGGTAGCTGTCGTAATAGGCAACCGCTGCGGAGAAGGTCGGAACCgg < 1:256488/55‑1 (MQ=255)
cagcagCACGGTAGCTGTCGTAATAGGCAACCGCTGCGGAGAAGGTCGGAACCgg < 1:3332856/55‑1 (MQ=255)
cagcagCACGGTAGCTGTCGTAATAGGCAACCGCTGCGGAGAAGGTCGGAACCgg < 1:275536/55‑1 (MQ=255)
|
CGCACCAAAATAGTCACGCTGTGCCTGGATCAGGTTCGCAGGCAGAACAGCAGCACGGTAGCTGTCGTAATAGGCAACCGCTGCGGAGAAGGTCGGAACCGGAATACCGTTCTG > minE/1320197‑1320310
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
