Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I0 R1
|
4577 |
57.4 |
3436498 |
77.7% |
2670158 |
63.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
minE |
1,330,797 |
G→A |
35.1% |
G263G (GGC→GGT) |
cpsG ← |
phosphomannomutase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | minE | 1,330,797 | 0 | G | A | 35.1%
| 49.9
/ 38.7
| 71 | G263G (GGC→GGT) | cpsG | phosphomannomutase |
| Reads supporting (aligned to +/- strand): ref base G (15/31); new base A (20/5); total (35/36) |
| Fisher's exact test for biased strand distribution p-value = 1.70e-04 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TCGTGGATGATCTTCGCGCCGGGATTTTTTTCGAGGAATGCTTCTGCCAACAGGCCGACAATGTAGTAGCCCTCAATAAACTGCCCTTTTTCGTCAAACAGGAAACAGCGGTCAAAATCGCCATCAAAAGC > minE/1330729‑1330859
|
tcgtggatGATCTTCGCGCCGGGGTTTTTTTCGAGGAATGCTTCTGACAACAGGCCGACAATGtagtag < 1:167318/69‑1 (MQ=255)
tcgtggatGATCTTCGCGCCGGGATTTTTTTCGAGGAATGGTTCTGCCAACAGGCCGACAATGtagtag < 1:3269845/69‑1 (MQ=255)
tcgtggatGATCTTCGCGCCGGGATTTTTTTCGAGGAATGCTTCTGCCAACAGGCCGACAATGtagtag < 1:2370216/69‑1 (MQ=255)
tcgtggatGATCTTCGCGCCGGGATTTTTTTCGAGGAATGCTTCTGCCAACAGGCCGACAATGtagtag < 1:1151498/69‑1 (MQ=255)
tcgtggatGATCTTCGCGCCGGGATTTTTTTCGAGGAATGCTTCTGCCAACAGGCCGACAATGtagtag < 1:2658664/69‑1 (MQ=255)
gatgatCTTCGCGCCGGGATTTTTTTCGAGGAATGCTTCTGCCAACAGGCCGACAATGTAGTAGCCCTc > 1:1981383/1‑69 (MQ=255)
gatgatCTTCGCGCCGGGATTTTTTTCGAGGAATGCTTCTGCCAACAGGCCGACAATGTAGTAGCCCTc > 1:458243/1‑69 (MQ=255)
gatgatCTTCGCGCCGGGATTTTTTTCGAGGAATGCTTCTGCCAACAGGCCGACAATGTAGTAGCCCTc > 1:3309216/1‑69 (MQ=255)
gatgatCTTCGCGCCGGGATTTTTTTCGAGGAATGCTTCTGCCAACAGGCCGACAATGTAGTAGCCCTc > 1:3263189/1‑69 (MQ=255)
tgatCTTCGCGCCGGGATTTTTTTCGAGGAATGCTTCTGCCAACAGGCCGACAATGTAGTAGCCCTCa > 1:452487/1‑68 (MQ=255)
atCTTCGCGCCGGGATTTTTTTCGAGGAATGCTTCTGCCAACAGGCCGACAATGTAGTAGCCCTCAATa < 1:318182/69‑1 (MQ=255)
atCTTCGCGCCGGGATTTTTTTCGAGGAATGCTTCTGCCAACAGGCCGACAATGTAGTAGCCCTCAATa < 1:3038899/69‑1 (MQ=255)
atCTTCGCGCCGGGATTTTTTTCGAGGAATGCTTCTGCCAACAGGCCGACAATGTAGTAGCCCTCAATa < 1:1870599/69‑1 (MQ=255)
atCTTCGCGCCGGGATTTTTTTCGAGGAATGCTTCTGCCAACAGGCCGACAATGTAGTAGCCCTCAATa < 1:3180679/69‑1 (MQ=255)
cGGGATTTTTTTCGAGGAATGCTTCTGCCAACAGGCCGACAATGTAGTAGCCCTCAATa < 1:240957/59‑1 (MQ=255)
gggATTTTTTTCGAGGAACGCTTCTGCCAGCAAACCGACAATGTAGTAACCCTCGATAAACTGCCCttt < 1:2381860/69‑1 (MQ=255)
gggATTTTTTTCGAGGAACGCTTCTGCCAGCAAACCGACAATGTAGTAACCCTCGATAAACTGCCCttt < 1:3095917/69‑1 (MQ=255)
gggATTTTTTTCGAGGAACGCTTCTGCCAGCAAACCGACAATGTAGTAACCCTCGATAAACTGCCCttt < 1:545185/69‑1 (MQ=255)
gggATTTTTTTCGAGGAACGCTTCTGCCAGCAAACCGACAATGTAGTAACCCTCGATAAACTGCCCttt < 1:1956642/69‑1 (MQ=255)
aTTTTTTTCGAGGAACGCTTCTGCCAGCAAACCGACAATGTAGTAACCCTCGATAAACTGCCCttt < 1:3264574/66‑1 (MQ=255)
ggAATGCTTCTGCCAACAGGCCGACAATGTAGTAGCCCTCAATAAACTGCCCTTTTTCGTCAAACAGGa < 1:142984/69‑1 (MQ=255)
ggAATGCTTCTGCCAACAGGCCGACAATGTAGTAGCCCTCAATAAACTGCCCTTTTTCGTCAAACAGGa < 1:597229/69‑1 (MQ=255)
ggAATGCTTCTGCCAACAGGCCGACAATGTAGTAGCCCTCAATAAACTGCCCTTTTTCGTCAAACAGGa < 1:2123316/69‑1 (MQ=255)
ggAATGCTTCTGCCAACAGGCCGACAATGTAGTAGCCCTCAATAAACTGCCCTTTTTCGTCAAACAGGa < 1:2559496/69‑1 (MQ=255)
aaTGCTTCTGCCAACAGGCCGACAATGTAGTAGCCCTCAATAAACTGCGCTTTTTCGTCAAACAGGa < 1:2218604/67‑1 (MQ=255)
cAGGCCGACAATGTAGTAGCCCTCAATAAACTGCGCTTTTTCGTCAAACAGGAAACAGCGGTCAAAATc > 1:462958/1‑69 (MQ=255)
cAGGCCGACAATGTAGTAGCCCTCAATAAACTGCCCTTTTTc > 1:2124637/1‑42 (MQ=255)
cAGGCCGACAATGTAGTAGCCCTCAATAAACTGCCCTTTTTCGTCAAACAGGAAACAGCGGTCaaaa > 1:1067448/1‑67 (MQ=255)
cAGGCCGACAATGTAGTAGCCCTCAATAAACTGCCCTTTTTCGTCAAACAGGAAACAGCGGTCAAAATc > 1:2860400/1‑69 (MQ=255)
cAGGCCGACAATGTAGTAGCCCTCAATAAACTGCCCTTTTTCGTCAAACAGGAAACAGCGGTCAAAATc > 1:784869/1‑69 (MQ=255)
cAGGCCGACAATGTAGTAGCCCTCAATAAACTGCCCTTTTTCGTCAAACAGGAAACAGCGGTCAAAATc > 1:3115419/1‑69 (MQ=255)
cAGGCCGACAATGTAGTAGCCCTCAATAAACTGCCCTTTTTCGTCAAACAGGAAACAGCGGTCAAAATc > 1:2619519/1‑69 (MQ=255)
cAGGCCGACAATGTAGTAGCCCTCAATAAACTGCCCTTTTTCGTCAAACAGGAAACAGCGGTCAAAATc > 1:3245679/1‑69 (MQ=255)
cAGGCCGACAATGTAGTAGCCCTCAATAAACTGCCCTTTTTCGTCAAACAGGAAACAGCGGTCAAAATc > 1:1413144/1‑69 (MQ=255)
cAGGCCGACAATGTAGTAGCCCTCAATAAACTGCCCTTTTTCGTCAAACAGGAAACAGCGGTCAAAATc > 1:1417242/1‑69 (MQ=255)
ggCCGACAATGTAGTAGCCCTCAATAAACTGCCCTTTTTCGTCAAACAGGAAACAGCGGTCAAAATCGc < 1:977129/69‑1 (MQ=255)
ggCCGACAATGTAGTAGCCCTCAATAAACTGCCCTTTTTCGTCAAACAGGAAACAGCGGTCAAAATCGc < 1:890152/69‑1 (MQ=255)
ggCCGACAATGTAGTAGCCCTCAATAAACTGCCCTTTTTCGTCAAACAGGAAACAGCGGTCAAAATCGc < 1:818698/69‑1 (MQ=255)
ggCCGACAATGTAGTAGCCCTCAATAAACTGCCCTTTTTCGTCAAACAGGAAACAGCGGTCAAAATCGc < 1:723193/69‑1 (MQ=255)
ggCCGACAATGTAGTAGCCCTCAATAAACTGCCCTTTTTCGTCAAACAGGAAACAGCGGTCAAAATCGc < 1:2625904/69‑1 (MQ=255)
ggCCGACAATGTAGTAGCCCTCAATAAACTGCCCTTTTTCGTCAAACAGGAAACAGCGGTCAAAATCGc < 1:2647944/69‑1 (MQ=255)
ggCCGACAATGTAGTAGCCCTCAATAAACTGCCCTTTTTCGTCAAACAGGAAACAGCGGTCAAAATCGc < 1:356813/69‑1 (MQ=255)
ggCCGACAATGTAGTAGCCCTCAATAAACTGCCCTTTTTCGTCAAACAGGAAACAGCGGTCAAAATCGc < 1:147622/69‑1 (MQ=255)
ggCCGACAATGTAGTAGCCCTCAATAAACTGCCCTTTTTCGTCAAACAGGAAACAGCGGTCAAAATCGc < 1:1566612/69‑1 (MQ=255)
ggCCGACAATGTAGTAGCCCTCAATAAACTGCCCTTTTTCGTCAAACAGGAAACAGCGGTCAAAATCGc < 1:2238521/69‑1 (MQ=255)
gACAATGTAGTAGCCCTCAATAAACTGCCCTTTTTCGTCAAACAGGAAACAGCGGTCAAAATCGc < 1:301194/65‑1 (MQ=255)
aCAATGTAGTAACCCTCGATAAACTGCCCTTTTTCGTCaa > 1:201916/1‑40 (MQ=255)
aCAATGTAGTAACCCTCGATAAACTGCCCTTTTTCGTCAAACAGGAAACAGCGGTCaa > 1:1658574/1‑58 (MQ=255)
aCAATGTAGTAACCCTCGATAAACTGCCCTTTTTCGTCAAACAGGAAACAGCGGTCAAAATCGCCATc > 1:1016839/1‑68 (MQ=255)
aCAATGTAGTAACCCTCGATAAACTGCCCTTTTTCGTCAAACAGGAAACAGCGGTCAAAATCGCCATc > 1:2216921/1‑68 (MQ=255)
aCAATGTAGTAACCCTCGATAAACTGCCCTTTTTCGTCAAACAGGAAACAGCGGTCAAAATCGCCATc > 1:2432324/1‑68 (MQ=255)
aCAATGTAGTAACCCTCGATAAACTGCCCTTTTTCGTCAAACAGGAAACAGCGGTCAAAATCGCCATc > 1:2503757/1‑68 (MQ=255)
aCAATGTAGTAACCCTCGATAAACTGCCCTTTTTCGTCAAACAGGAAACAGCGGTCAAAATCGCCATc > 1:1168340/1‑68 (MQ=255)
aCAATGTAGTAACCCTCGATAAACTGCCCTTTTTCGTCAAACAGGAAACAGCGGTCAAAATCGCCATc > 1:2167794/1‑68 (MQ=255)
aCAATGTAGTAACCCTCGATAAACTGCCCTTTTTCGTCAAACAGGAAACAGCGGTCAAAATCGCCATc > 1:1274904/1‑68 (MQ=255)
aCAATGTAGTAACCCTCGATAAACTGCCCTTTTTCGTCAAACAGGAAACAGCGGTCAAAATCGCCATc > 1:1857569/1‑68 (MQ=255)
aCAATGTAGTAACCCTCGATAAACTGCCCTTTTTCGTCAAACAGGAAACAGCGGTCAAAATCGCCATc > 1:1979716/1‑68 (MQ=255)
aCAATGTAGTAACCCTCGATAAACTGCCCTTTTTCGTCAAACAGGAAACAGCGGTCAAAATCGCCATc > 1:2901752/1‑68 (MQ=255)
aCAATGTAGTAACCCTCGATAAACTGCCCTTTTTCGTCAAACAGGAAACAGCGGTCAAAATCGCCATc > 1:3269569/1‑68 (MQ=255)
aCAATGTAGTAACCCTCGATAAACTGCCCTTTTTCGTCAAACAGGAAACAGCGGTCAAAATCGCCATc > 1:1856433/1‑68 (MQ=255)
aCAATGTAGTAACCCTCGATAAACTGCCCTTTTTCGTCAAACAGGAAACAGCGGTCAAAATCGCCATc > 1:3160071/1‑68 (MQ=255)
aCAATGTAGTAACCCTCGATAAACTGCCCTTTTTCGTCAAACAGGAAACAGCGGTCAAAATCGCCATc > 1:1777826/1‑68 (MQ=255)
aCAATGTAGTAACCCTCGATAAACTGCCCTTTTTCGTCAAACAGGAAACAGCGGTCAAAATCGCCATc > 1:1712944/1‑68 (MQ=255)
aCAATGTAGTAACCCTCGATAAACTGCCCTTTTTCGTCAAACAGGAAACAGCGGTCAAAATCGCCATc > 1:3057031/1‑68 (MQ=255)
aCAATGTAGTAACCCTCGATAAACTGCCCTTTTTCGTCAAACAGGAAACAGCGGTCAAAATCGCCATc > 1:1878218/1‑68 (MQ=255)
aCAATGTAGTAACCCTCGATAAACTGCCCTATTTCGTCAAACAGGAAACAGCGGTCAAAATCGCCATc > 1:6702/1‑68 (MQ=255)
gtagtaGCCCTCAATAAACTGCCCTTTTTCGTCAAACAGGAAACAGCGGTCAAAATCGCCATCAAAAGc < 1:1191739/69‑1 (MQ=255)
gtagtaGCCCTCAATAAACTGCCCTTTTTCGTCAAACAGGAAACAGCGGTCAAAATCGCCATCAAAAGc < 1:1173719/69‑1 (MQ=255)
gtagtaGCCCTCAATAAACTGCCCTTTTTCGTCAAACAGGAAACAGCGGTCAAAATCGCCATCAAAAGc < 1:1169831/69‑1 (MQ=255)
gtagtaGCCCTCAATAAACTGCCCTTTTTCGTCAAACAGGAAACAGCGGTCAAAATCGCCATCAAAAGc < 1:3206164/69‑1 (MQ=255)
gtagtaGCCCTCAATAAACTGCCCTTTTTCGTCAAACAGGAAACAGCGGTCAAAATCGCCATCAAAAGc < 1:782707/69‑1 (MQ=255)
gtagtaGCCCTCAATAAACTGCCCTTTTTCGTCAAACAGGAAACAGCGGTCAAAATCGCCATCAAAAGc < 1:1718396/69‑1 (MQ=255)
gtagtaGCCCTCAATAAACTGCCCTTTTTCGTCAAACAGGAAACAGCGGTCAAAATCGCCATCAAAAGc < 1:805761/69‑1 (MQ=255)
gtagtaGCCCTCAATAAACTGCCCTTTTTCGTCAAACAGGAAACAGCGGTCAAAATCGCCATCAAAAGc < 1:807984/69‑1 (MQ=255)
gtagtaGCCCTCAATAAACTGCCCTTTTTCGTCAAACAGGAAACAGCGGTCAAAATCGCCATCAAAAGc < 1:344326/69‑1 (MQ=255)
gtagtaGCCCTCAATAAACTGCCCTTTTTCGTCAAACAGGAAACAGCGGTCAAAATCGCCATCAAAAGc < 1:2960904/69‑1 (MQ=255)
agtagCCCTCAATAAACTGCCCTTTTTCGTCAAACAGGAAACAGCGGTCAAAATCGCCATCAAAAGc < 1:880948/67‑1 (MQ=255)
|
TCGTGGATGATCTTCGCGCCGGGATTTTTTTCGAGGAATGCTTCTGCCAACAGGCCGACAATGTAGTAGCCCTCAATAAACTGCCCTTTTTCGTCAAACAGGAAACAGCGGTCAAAATCGCCATCAAAAGC > minE/1330729‑1330859
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
